miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 57618 0.66 0.64595
Target:  5'- --aCGCCG-CGcaGCCCUCCGGGuggcucagcAGCCg -3'
miRNA:   3'- ggaGCGGCuGC--UGGGGGGCCU---------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 109076 0.66 0.64595
Target:  5'- gCCUCGgCGAucaugccguUGGCCagguCCCGGAcGCCg -3'
miRNA:   3'- -GGAGCgGCU---------GCUGGg---GGGCCUuCGGa -5'
23698 5' -62.4 NC_005261.1 + 49981 0.66 0.64595
Target:  5'- cCCggCGCCGcCGucgucCCCCCCG--AGCCg -3'
miRNA:   3'- -GGa-GCGGCuGCu----GGGGGGCcuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 63005 0.66 0.64595
Target:  5'- cCCUCGgCGGCcgcGCCCgCgCGGgcGCCg -3'
miRNA:   3'- -GGAGCgGCUGc--UGGG-GgGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 25201 0.66 0.64595
Target:  5'- gCCUCGCUG-CGAuuggccggcCCCCCCGcuGGCg- -3'
miRNA:   3'- -GGAGCGGCuGCU---------GGGGGGCcuUCGga -5'
23698 5' -62.4 NC_005261.1 + 100061 0.66 0.64595
Target:  5'- --gCGCCGcCG-CCgCCCGGggGCg- -3'
miRNA:   3'- ggaGCGGCuGCuGGgGGGCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 4723 0.66 0.643031
Target:  5'- cCCggaGUCGGCGGCCccagagucaucgguCCCCGGcucgggcuuGGGCCUg -3'
miRNA:   3'- -GGag-CGGCUGCUGG--------------GGGGCC---------UUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 53663 0.66 0.642058
Target:  5'- gCCUgGCCGcgggucgcggccuCGACagcgagaaaaagCCCCCGGgcGCCg -3'
miRNA:   3'- -GGAgCGGCu------------GCUG------------GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 108703 0.66 0.636218
Target:  5'- aCUCGUCGACGAgCgCCaCGGcgaagagcgcgcGGGCCa -3'
miRNA:   3'- gGAGCGGCUGCUgGgGG-GCC------------UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 10538 0.66 0.636218
Target:  5'- gCUCGCUGuCG--CCCCCGGcgcGCCUg -3'
miRNA:   3'- gGAGCGGCuGCugGGGGGCCuu-CGGA- -5'
23698 5' -62.4 NC_005261.1 + 88137 0.66 0.636218
Target:  5'- uCCUCGCgccgcgCGGgGGCgCCCCGGccgcgcAGCCg -3'
miRNA:   3'- -GGAGCG------GCUgCUGgGGGGCCu-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 16772 0.66 0.636218
Target:  5'- gCUCGUCGuccgugggguagGCGaaGCCCgCCaGGAAGCCg -3'
miRNA:   3'- gGAGCGGC------------UGC--UGGGgGG-CCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 72623 0.66 0.636218
Target:  5'- gCgggCGCaggGGCGGCuuuauaguCCCCUGGggGCCg -3'
miRNA:   3'- gGa--GCGg--CUGCUG--------GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 82426 0.66 0.636218
Target:  5'- gCCcCGCCGuCcGCgCCCCCGGccGGCCc -3'
miRNA:   3'- -GGaGCGGCuGcUG-GGGGGCCu-UCGGa -5'
23698 5' -62.4 NC_005261.1 + 126655 0.66 0.633298
Target:  5'- gCCUguaCGCCGGCcacauacuccgggaGGCCCUCCuccGAGGCCg -3'
miRNA:   3'- -GGA---GCGGCUG--------------CUGGGGGGc--CUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 83997 0.66 0.626483
Target:  5'- cCCUC-CCG-CGGCCCCCggCGGGAuGCg- -3'
miRNA:   3'- -GGAGcGGCuGCUGGGGG--GCCUU-CGga -5'
23698 5' -62.4 NC_005261.1 + 122368 0.66 0.626483
Target:  5'- gCUCGC--GCGGCCCCaCCGc-GGCCUg -3'
miRNA:   3'- gGAGCGgcUGCUGGGG-GGCcuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 62302 0.66 0.626483
Target:  5'- gCCgcgcgggCGCgCGGCGGCCCCgCGGucccccagcGCCUc -3'
miRNA:   3'- -GGa------GCG-GCUGCUGGGGgGCCuu-------CGGA- -5'
23698 5' -62.4 NC_005261.1 + 75555 0.66 0.626483
Target:  5'- uCCU-GCCGGCcAUCCCCgGGgcGCUg -3'
miRNA:   3'- -GGAgCGGCUGcUGGGGGgCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 40471 0.66 0.626483
Target:  5'- aCCUUGUCGA-GGCUcaggCCCUGGGAGCg- -3'
miRNA:   3'- -GGAGCGGCUgCUGG----GGGGCCUUCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.