miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 32620 0.66 0.6547
Target:  5'- uCCUCGgaCGACGAgCCgggcucgCCCUGGAgcggGGCCa -3'
miRNA:   3'- -GGAGCg-GCUGCU-GG-------GGGGCCU----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 73036 0.66 0.655672
Target:  5'- gCCgucgCGCC-ACGcGCCCCCCGc--GCCUa -3'
miRNA:   3'- -GGa---GCGGcUGC-UGGGGGGCcuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 77709 0.66 0.607032
Target:  5'- cCCUCGaCCGcCG-CCCCCC---AGCCa -3'
miRNA:   3'- -GGAGC-GGCuGCuGGGGGGccuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 53663 0.66 0.642058
Target:  5'- gCCUgGCCGcgggucgcggccuCGACagcgagaaaaagCCCCCGGgcGCCg -3'
miRNA:   3'- -GGAgCGGCu------------GCUG------------GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 4723 0.66 0.643031
Target:  5'- cCCggaGUCGGCGGCCccagagucaucgguCCCCGGcucgggcuuGGGCCUg -3'
miRNA:   3'- -GGag-CGGCUGCUGG--------------GGGGCC---------UUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 109881 0.66 0.607032
Target:  5'- gCC-CGCgGGCGGgCgCCCCGGGgcuacAGCCc -3'
miRNA:   3'- -GGaGCGgCUGCUgG-GGGGCCU-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 42639 0.66 0.607032
Target:  5'- aCUCgGCCGccGCGGCCgCgCGGAaccAGCCa -3'
miRNA:   3'- gGAG-CGGC--UGCUGGgGgGCCU---UCGGa -5'
23698 5' -62.4 NC_005261.1 + 116720 0.66 0.616753
Target:  5'- gCUgGCCGACGucGCCgCCCUGcuGAGCCc -3'
miRNA:   3'- gGAgCGGCUGC--UGG-GGGGCc-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 46253 0.66 0.62551
Target:  5'- gCCgCGgCGGCGGCCgcgaccguguCCCCGGGgcgcucuGGCCg -3'
miRNA:   3'- -GGaGCgGCUGCUGG----------GGGGCCU-------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 49981 0.66 0.64595
Target:  5'- cCCggCGCCGcCGucgucCCCCCCG--AGCCg -3'
miRNA:   3'- -GGa-GCGGCuGCu----GGGGGGCcuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 130709 0.66 0.607032
Target:  5'- aCCUCGCCGAgGACgucaCCUUCGcGcuGCCg -3'
miRNA:   3'- -GGAGCGGCUgCUG----GGGGGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 88137 0.66 0.636218
Target:  5'- uCCUCGCgccgcgCGGgGGCgCCCCGGccgcgcAGCCg -3'
miRNA:   3'- -GGAGCG------GCUgCUGgGGGGCCu-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 62302 0.66 0.626483
Target:  5'- gCCgcgcgggCGCgCGGCGGCCCCgCGGucccccagcGCCUc -3'
miRNA:   3'- -GGa------GCG-GCUGCUGGGGgGCCuu-------CGGA- -5'
23698 5' -62.4 NC_005261.1 + 64672 0.66 0.6547
Target:  5'- uCgUCGCCGugGugCggcaccgggcgcgUCCCGG-GGCCg -3'
miRNA:   3'- -GgAGCGGCugCugG-------------GGGGCCuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 106659 0.66 0.655672
Target:  5'- gCUCGCCGGCGcggucguccagcGCgCgCCCGaGGGCCg -3'
miRNA:   3'- gGAGCGGCUGC------------UGgG-GGGCcUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 25201 0.66 0.64595
Target:  5'- gCCUCGCUG-CGAuuggccggcCCCCCCGcuGGCg- -3'
miRNA:   3'- -GGAGCGGCuGCU---------GGGGGGCcuUCGga -5'
23698 5' -62.4 NC_005261.1 + 125268 0.66 0.655672
Target:  5'- uCCUCGuCCGGgGGCCg-CUGGAAGUCa -3'
miRNA:   3'- -GGAGC-GGCUgCUGGggGGCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 72623 0.66 0.636218
Target:  5'- gCgggCGCaggGGCGGCuuuauaguCCCCUGGggGCCg -3'
miRNA:   3'- gGa--GCGg--CUGCUG--------GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 63005 0.66 0.64595
Target:  5'- cCCUCGgCGGCcgcGCCCgCgCGGgcGCCg -3'
miRNA:   3'- -GGAGCgGCUGc--UGGG-GgGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 10735 0.66 0.655672
Target:  5'- uCCUcCGCCGcCu-CCUCCCGGuccucGGCCUc -3'
miRNA:   3'- -GGA-GCGGCuGcuGGGGGGCCu----UCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.