miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 100061 0.66 0.64595
Target:  5'- --gCGCCGcCG-CCgCCCGGggGCg- -3'
miRNA:   3'- ggaGCGGCuGCuGGgGGGCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 97794 0.66 0.607032
Target:  5'- cCCggGCCGGCGACCgUCCGccGgcGCCc -3'
miRNA:   3'- -GGagCGGCUGCUGGgGGGC--CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 63005 0.66 0.64595
Target:  5'- cCCUCGgCGGCcgcGCCCgCgCGGgcGCCg -3'
miRNA:   3'- -GGAGCgGCUGc--UGGG-GgGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 57618 0.66 0.64595
Target:  5'- --aCGCCG-CGcaGCCCUCCGGGuggcucagcAGCCg -3'
miRNA:   3'- ggaGCGGCuGC--UGGGGGGCCU---------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 122368 0.66 0.626483
Target:  5'- gCUCGC--GCGGCCCCaCCGc-GGCCUg -3'
miRNA:   3'- gGAGCGgcUGCUGGGG-GGCcuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 42639 0.66 0.607032
Target:  5'- aCUCgGCCGccGCGGCCgCgCGGAaccAGCCa -3'
miRNA:   3'- gGAG-CGGC--UGCUGGgGgGCCU---UCGGa -5'
23698 5' -62.4 NC_005261.1 + 109881 0.66 0.607032
Target:  5'- gCC-CGCgGGCGGgCgCCCCGGGgcuacAGCCc -3'
miRNA:   3'- -GGaGCGgCUGCUgG-GGGGCCU-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 82426 0.66 0.636218
Target:  5'- gCCcCGCCGuCcGCgCCCCCGGccGGCCc -3'
miRNA:   3'- -GGaGCGGCuGcUG-GGGGGCCu-UCGGa -5'
23698 5' -62.4 NC_005261.1 + 75555 0.66 0.626483
Target:  5'- uCCU-GCCGGCcAUCCCCgGGgcGCUg -3'
miRNA:   3'- -GGAgCGGCUGcUGGGGGgCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 77709 0.66 0.607032
Target:  5'- cCCUCGaCCGcCG-CCCCCC---AGCCa -3'
miRNA:   3'- -GGAGC-GGCuGCuGGGGGGccuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 40471 0.66 0.626483
Target:  5'- aCCUUGUCGA-GGCUcaggCCCUGGGAGCg- -3'
miRNA:   3'- -GGAGCGGCUgCUGG----GGGGCCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 73036 0.66 0.655672
Target:  5'- gCCgucgCGCC-ACGcGCCCCCCGc--GCCUa -3'
miRNA:   3'- -GGa---GCGGcUGC-UGGGGGGCcuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 32620 0.66 0.6547
Target:  5'- uCCUCGgaCGACGAgCCgggcucgCCCUGGAgcggGGCCa -3'
miRNA:   3'- -GGAGCg-GCUGCU-GG-------GGGGCCU----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 49981 0.66 0.64595
Target:  5'- cCCggCGCCGcCGucgucCCCCCCG--AGCCg -3'
miRNA:   3'- -GGa-GCGGCuGCu----GGGGGGCcuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 72623 0.66 0.636218
Target:  5'- gCgggCGCaggGGCGGCuuuauaguCCCCUGGggGCCg -3'
miRNA:   3'- gGa--GCGg--CUGCUG--------GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 106659 0.66 0.655672
Target:  5'- gCUCGCCGGCGcggucguccagcGCgCgCCCGaGGGCCg -3'
miRNA:   3'- gGAGCGGCUGC------------UGgG-GGGCcUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 108703 0.66 0.636218
Target:  5'- aCUCGUCGACGAgCgCCaCGGcgaagagcgcgcGGGCCa -3'
miRNA:   3'- gGAGCGGCUGCUgGgGG-GCC------------UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 78330 0.66 0.655672
Target:  5'- aCgCGCCGACGcGCCaacgcgguaCCUCGGgcGCCa -3'
miRNA:   3'- gGaGCGGCUGC-UGG---------GGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 64672 0.66 0.6547
Target:  5'- uCgUCGCCGugGugCggcaccgggcgcgUCCCGG-GGCCg -3'
miRNA:   3'- -GgAGCGGCugCugG-------------GGGGCCuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 62302 0.66 0.626483
Target:  5'- gCCgcgcgggCGCgCGGCGGCCCCgCGGucccccagcGCCUc -3'
miRNA:   3'- -GGa------GCG-GCUGCUGGGGgGCCuu-------CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.