miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 11022 0.69 0.475264
Target:  5'- gCCUCGUCGcCGGgcccgUCCCCCGGcGGCaCUc -3'
miRNA:   3'- -GGAGCGGCuGCU-----GGGGGGCCuUCG-GA- -5'
23698 5' -62.4 NC_005261.1 + 12496 0.68 0.511718
Target:  5'- aCUCuCC-AUGGCCCCCCGGgcGaCCg -3'
miRNA:   3'- gGAGcGGcUGCUGGGGGGCCuuC-GGa -5'
23698 5' -62.4 NC_005261.1 + 12719 0.7 0.406565
Target:  5'- gCUCGggcgcgcgggcCCGcCGGCCCCCUGGGcgGGCCc -3'
miRNA:   3'- gGAGC-----------GGCuGCUGGGGGGCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 13853 0.68 0.511718
Target:  5'- uCCUCGUCGcCGGCgUCgCCGGcGGCCc -3'
miRNA:   3'- -GGAGCGGCuGCUGgGG-GGCCuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 16772 0.66 0.636218
Target:  5'- gCUCGUCGuccgugggguagGCGaaGCCCgCCaGGAAGCCg -3'
miRNA:   3'- gGAGCGGC------------UGC--UGGGgGG-CCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 18207 0.68 0.530376
Target:  5'- ---gGCCGcgcCGAUCCCCCGGuccAGCCc -3'
miRNA:   3'- ggagCGGCu--GCUGGGGGGCCu--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 19781 0.67 0.549277
Target:  5'- gCCUCGaacaCG-CGGCCCUccgagCCGGggGUCa -3'
miRNA:   3'- -GGAGCg---GCuGCUGGGG-----GGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 19862 0.75 0.195802
Target:  5'- uCCUCGCgCGA-GACCCCgCCGGcGGGCCc -3'
miRNA:   3'- -GGAGCG-GCUgCUGGGG-GGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 23793 0.68 0.510792
Target:  5'- gCUCGCCGGggcaggcCGGCUggggcgggcuugCCCCGGGcgGGCCg -3'
miRNA:   3'- gGAGCGGCU-------GCUGG------------GGGGCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 23850 0.68 0.510792
Target:  5'- gCUCGCCGGggcaggcCGGCUggggcgggcuugCCCCGGGcgGGCCg -3'
miRNA:   3'- gGAGCGGCU-------GCUGG------------GGGGCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 24344 0.67 0.549277
Target:  5'- aCCUCGCaauGCGGCUCCCgGGGAucGUCg -3'
miRNA:   3'- -GGAGCGgc-UGCUGGGGGgCCUU--CGGa -5'
23698 5' -62.4 NC_005261.1 + 24390 0.67 0.549277
Target:  5'- gCUCGUCGGCGGCggggcggUCCUGGggGCUc -3'
miRNA:   3'- gGAGCGGCUGCUGg------GGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 25201 0.66 0.64595
Target:  5'- gCCUCGCUG-CGAuuggccggcCCCCCCGcuGGCg- -3'
miRNA:   3'- -GGAGCGGCuGCU---------GGGGGGCcuUCGga -5'
23698 5' -62.4 NC_005261.1 + 28156 0.67 0.575109
Target:  5'- aUCUcCGCCGcucggGCG-CCCCCCGucucgcugcgcgccGAAGCCg -3'
miRNA:   3'- -GGA-GCGGC-----UGCuGGGGGGC--------------CUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 28205 0.69 0.487881
Target:  5'- gCCUCGCCGccgcugccGCGgccccagcuACCCCCCGGcgcgcgcgauagcggGGGCUg -3'
miRNA:   3'- -GGAGCGGC--------UGC---------UGGGGGGCC---------------UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 29127 0.67 0.553083
Target:  5'- cCCUggCGCCGGgGggcGCCCCgCCGGAcccgcccgcggauccAGCCa -3'
miRNA:   3'- -GGA--GCGGCUgC---UGGGG-GGCCU---------------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 29191 0.68 0.493337
Target:  5'- cCCUCGCCG-CGGCgCCCgCgCGGgcGCg- -3'
miRNA:   3'- -GGAGCGGCuGCUG-GGG-G-GCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 29280 0.71 0.351822
Target:  5'- cCCgcuGCUGACG-CCCUCCGGcgAGGCCUg -3'
miRNA:   3'- -GGag-CGGCUGCuGGGGGGCC--UUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 29780 0.72 0.309221
Target:  5'- aCgCGCCcAUGGCCUaCCCGGAGGCCg -3'
miRNA:   3'- gGaGCGGcUGCUGGG-GGGCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 30926 0.78 0.136289
Target:  5'- cCCggcCGCCGGCGcaGCCCCUCGGggGCg- -3'
miRNA:   3'- -GGa--GCGGCUGC--UGGGGGGCCuuCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.