miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 118 0.67 0.587649
Target:  5'- cCCgCGCCGGCGcCgCCCCUGGu-GCUc -3'
miRNA:   3'- -GGaGCGGCUGCuG-GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 663 0.66 0.655672
Target:  5'- cCCggCGCCGAguccUGGCCCUCCGcGGAcGCUc -3'
miRNA:   3'- -GGa-GCGGCU----GCUGGGGGGC-CUU-CGGa -5'
23698 5' -62.4 NC_005261.1 + 1218 0.7 0.414811
Target:  5'- cCCcCGCCGAUGccgccgucgccGgCCCCgGGAAGCCc -3'
miRNA:   3'- -GGaGCGGCUGC-----------UgGGGGgCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 1304 0.7 0.406565
Target:  5'- cCCgUCGCCGGCGGCggcacgcgCUCCGGGAcGCCg -3'
miRNA:   3'- -GG-AGCGGCUGCUGg-------GGGGCCUU-CGGa -5'
23698 5' -62.4 NC_005261.1 + 1798 0.68 0.511718
Target:  5'- --cCGCagCGGCGGCgCCCCGGGguagAGCCg -3'
miRNA:   3'- ggaGCG--GCUGCUGgGGGGCCU----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 2275 0.71 0.366153
Target:  5'- uCCUCGCCGggcggcgccgccaGCGcCUCCCCGGGcAGCg- -3'
miRNA:   3'- -GGAGCGGC-------------UGCuGGGGGGCCU-UCGga -5'
23698 5' -62.4 NC_005261.1 + 2991 0.66 0.665376
Target:  5'- gCUCgGCCuGGCGGCCCggcgccggggcuCCCGcGGGCCUc -3'
miRNA:   3'- gGAG-CGG-CUGCUGGG------------GGGCcUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 3915 0.7 0.382454
Target:  5'- cCCgcgcCGCCGGCGccgGCCUCCgGGuAGGCCa -3'
miRNA:   3'- -GGa---GCGGCUGC---UGGGGGgCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 4571 0.66 0.664407
Target:  5'- --cCGCgGGCGgguccggcggggcGCCCCCCGGc-GCCa -3'
miRNA:   3'- ggaGCGgCUGC-------------UGGGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 4723 0.66 0.643031
Target:  5'- cCCggaGUCGGCGGCCccagagucaucgguCCCCGGcucgggcuuGGGCCUg -3'
miRNA:   3'- -GGag-CGGCUGCUGG--------------GGGGCC---------UUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 4989 0.66 0.663437
Target:  5'- cCCggagggCGCCGAgGcccccggGCCCCCCGGGuucuccgGGuCCUc -3'
miRNA:   3'- -GGa-----GCGGCUgC-------UGGGGGGCCU-------UC-GGA- -5'
23698 5' -62.4 NC_005261.1 + 5050 0.7 0.431607
Target:  5'- cCCUCGUCGucguCGGCCCCgCCGGccucGUCa -3'
miRNA:   3'- -GGAGCGGCu---GCUGGGG-GGCCuu--CGGa -5'
23698 5' -62.4 NC_005261.1 + 5134 0.67 0.567423
Target:  5'- gCC-CGCCGGCGcucgcgcGCCUcggCCCGGcGGGCCg -3'
miRNA:   3'- -GGaGCGGCUGC-------UGGG---GGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 5702 0.71 0.344441
Target:  5'- uCCUCcCCGcCGGCCCCCuuucgCGGAgaGGCCg -3'
miRNA:   3'- -GGAGcGGCuGCUGGGGG-----GCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 9331 0.78 0.129741
Target:  5'- cCCgcCGCCGACGAgCCCaCCGGGAGCa- -3'
miRNA:   3'- -GGa-GCGGCUGCUgGGG-GGCCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 9359 0.8 0.089204
Target:  5'- --cCGCCGACGA-UCCCCGGGAGCCg -3'
miRNA:   3'- ggaGCGGCUGCUgGGGGGCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 9535 1.09 0.000863
Target:  5'- gCCUCGCCGACGACCCCCCGGAAGCCUg -3'
miRNA:   3'- -GGAGCGGCUGCUGGGGGGCCUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 9763 0.7 0.390385
Target:  5'- aCCgcgUGCCGACGACCCCgaaacccgCCGcGAGGUg- -3'
miRNA:   3'- -GGa--GCGGCUGCUGGGG--------GGC-CUUCGga -5'
23698 5' -62.4 NC_005261.1 + 10538 0.66 0.636218
Target:  5'- gCUCGCUGuCG--CCCCCGGcgcGCCUg -3'
miRNA:   3'- gGAGCGGCuGCugGGGGGCCuu-CGGA- -5'
23698 5' -62.4 NC_005261.1 + 10735 0.66 0.655672
Target:  5'- uCCUcCGCCGcCu-CCUCCCGGuccucGGCCUc -3'
miRNA:   3'- -GGA-GCGGCuGcuGGGGGGCCu----UCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.