miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 137801 0.67 0.587649
Target:  5'- cCCgCGCCGGCGcCgCCCCUGGu-GCUc -3'
miRNA:   3'- -GGaGCGGCUGCuG-GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 134115 0.75 0.213128
Target:  5'- gCUCGCCGccgacuuccgccuCGACCCCCUGGGcugcGCCUg -3'
miRNA:   3'- gGAGCGGCu------------GCUGGGGGGCCUu---CGGA- -5'
23698 5' -62.4 NC_005261.1 + 133784 0.66 0.665376
Target:  5'- cCCUCGUgCGGCGcauCCCgCCCGGGcuGCUc -3'
miRNA:   3'- -GGAGCG-GCUGCu--GGG-GGGCCUu-CGGa -5'
23698 5' -62.4 NC_005261.1 + 133511 0.67 0.577998
Target:  5'- gCCUCGggaccguguucaCCGugGACCUCUCGGGGcGCg- -3'
miRNA:   3'- -GGAGC------------GGCugCUGGGGGGCCUU-CGga -5'
23698 5' -62.4 NC_005261.1 + 132592 0.68 0.502491
Target:  5'- gCC-CGCgGACG-CCCggCCCGGcGAGCCg -3'
miRNA:   3'- -GGaGCGgCUGCuGGG--GGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 132373 0.67 0.577998
Target:  5'- gCUCGCCGcgcucGCGGCgcuguUCCCCG-AGGCCg -3'
miRNA:   3'- gGAGCGGC-----UGCUG-----GGGGGCcUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 131634 0.69 0.440153
Target:  5'- cCCgccgCGaggaCCGACGGgCCCCCCGGgcGCa- -3'
miRNA:   3'- -GGa---GC----GGCUGCU-GGGGGGCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 131565 0.73 0.258703
Target:  5'- gCCgUCGcCCGGCuGCCCCCCGcgacggccGAGGCCUa -3'
miRNA:   3'- -GG-AGC-GGCUGcUGGGGGGC--------CUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 131434 0.69 0.478853
Target:  5'- --gCGCCGGCGcCCCCCuugcgccgcgccucgCGGgcGCCUc -3'
miRNA:   3'- ggaGCGGCUGCuGGGGG---------------GCCuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 130709 0.66 0.607032
Target:  5'- aCCUCGCCGAgGACgucaCCUUCGcGcuGCCg -3'
miRNA:   3'- -GGAGCGGCUgCUG----GGGGGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 130653 0.77 0.150304
Target:  5'- gCUCGCCGACGcgcuGCUCCUCGGcGAGCCc -3'
miRNA:   3'- gGAGCGGCUGC----UGGGGGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 129111 0.74 0.247175
Target:  5'- uCCU-GCCGACagccuGGCCCCCUGGgGAGCCc -3'
miRNA:   3'- -GGAgCGGCUG-----CUGGGGGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 127885 0.69 0.48426
Target:  5'- gUCgCGCCGGCG-CCCgUCGGGcccgGGCCUg -3'
miRNA:   3'- -GGaGCGGCUGCuGGGgGGCCU----UCGGA- -5'
23698 5' -62.4 NC_005261.1 + 127303 0.68 0.524752
Target:  5'- cCC-CGCCGGCuGGCgguggggcccugccgCCCgCGGggGCCg -3'
miRNA:   3'- -GGaGCGGCUG-CUG---------------GGGgGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 126655 0.66 0.633298
Target:  5'- gCCUguaCGCCGGCcacauacuccgggaGGCCCUCCuccGAGGCCg -3'
miRNA:   3'- -GGA---GCGGCUG--------------CUGGGGGGc--CUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 125268 0.66 0.655672
Target:  5'- uCCUCGuCCGGgGGCCg-CUGGAAGUCa -3'
miRNA:   3'- -GGAGC-GGCUgCUGGggGGCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 122368 0.66 0.626483
Target:  5'- gCUCGC--GCGGCCCCaCCGc-GGCCUg -3'
miRNA:   3'- gGAGCGgcUGCUGGGG-GGCcuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 119829 0.7 0.414811
Target:  5'- cCCUCGcCCGcCGA--CCCCGGcAGCCUg -3'
miRNA:   3'- -GGAGC-GGCuGCUggGGGGCCuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 119535 0.69 0.448794
Target:  5'- cCCgcgGCCGAgcaaGGCCCCgCCGcGggGCCg -3'
miRNA:   3'- -GGag-CGGCUg---CUGGGG-GGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 119176 0.68 0.521015
Target:  5'- uUUCGCCGAgaGCCCgCCGGAccgagAGUCUa -3'
miRNA:   3'- gGAGCGGCUgcUGGGgGGCCU-----UCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.