miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 97794 0.66 0.607032
Target:  5'- cCCggGCCGGCGACCgUCCGccGgcGCCc -3'
miRNA:   3'- -GGagCGGCUGCUGGgGGGC--CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 16772 0.66 0.636218
Target:  5'- gCUCGUCGuccgugggguagGCGaaGCCCgCCaGGAAGCCg -3'
miRNA:   3'- gGAGCGGC------------UGC--UGGGgGG-CCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 88137 0.66 0.636218
Target:  5'- uCCUCGCgccgcgCGGgGGCgCCCCGGccgcgcAGCCg -3'
miRNA:   3'- -GGAGCG------GCUgCUGgGGGGCCu-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 106770 0.66 0.616753
Target:  5'- gCUUGCCGGCGGCCagCCCaGc-GCCg -3'
miRNA:   3'- gGAGCGGCUGCUGGg-GGGcCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 109881 0.66 0.607032
Target:  5'- gCC-CGCgGGCGGgCgCCCCGGGgcuacAGCCc -3'
miRNA:   3'- -GGaGCGgCUGCUgG-GGGGCCU-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 46253 0.66 0.62551
Target:  5'- gCCgCGgCGGCGGCCgcgaccguguCCCCGGGgcgcucuGGCCg -3'
miRNA:   3'- -GGaGCgGCUGCUGG----------GGGGCCU-------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 102573 0.66 0.607032
Target:  5'- gCCUCGCCGuccgcgucgGCGGCCUcgCCCGc--GCCUu -3'
miRNA:   3'- -GGAGCGGC---------UGCUGGG--GGGCcuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 122368 0.66 0.626483
Target:  5'- gCUCGC--GCGGCCCCaCCGc-GGCCUg -3'
miRNA:   3'- gGAGCGgcUGCUGGGG-GGCcuUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 89770 0.66 0.607032
Target:  5'- gCCgUgGCCGAggaGGCCCUgCGGGAGCg- -3'
miRNA:   3'- -GG-AgCGGCUg--CUGGGGgGCCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 77709 0.66 0.607032
Target:  5'- cCCUCGaCCGcCG-CCCCCC---AGCCa -3'
miRNA:   3'- -GGAGC-GGCuGCuGGGGGGccuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 83997 0.66 0.626483
Target:  5'- cCCUC-CCG-CGGCCCCCggCGGGAuGCg- -3'
miRNA:   3'- -GGAGcGGCuGCUGGGGG--GCCUU-CGga -5'
23698 5' -62.4 NC_005261.1 + 116720 0.66 0.616753
Target:  5'- gCUgGCCGACGucGCCgCCCUGcuGAGCCc -3'
miRNA:   3'- gGAgCGGCUGC--UGG-GGGGCc-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 126655 0.66 0.633298
Target:  5'- gCCUguaCGCCGGCcacauacuccgggaGGCCCUCCuccGAGGCCg -3'
miRNA:   3'- -GGA---GCGGCUG--------------CUGGGGGGc--CUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 62302 0.66 0.626483
Target:  5'- gCCgcgcgggCGCgCGGCGGCCCCgCGGucccccagcGCCUc -3'
miRNA:   3'- -GGa------GCG-GCUGCUGGGGgGCCuu-------CGGA- -5'
23698 5' -62.4 NC_005261.1 + 10538 0.66 0.636218
Target:  5'- gCUCGCUGuCG--CCCCCGGcgcGCCUg -3'
miRNA:   3'- gGAGCGGCuGCugGGGGGCCuu-CGGA- -5'
23698 5' -62.4 NC_005261.1 + 130709 0.66 0.607032
Target:  5'- aCCUCGCCGAgGACgucaCCUUCGcGcuGCCg -3'
miRNA:   3'- -GGAGCGGCUgCUG----GGGGGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 133784 0.66 0.665376
Target:  5'- cCCUCGUgCGGCGcauCCCgCCCGGGcuGCUc -3'
miRNA:   3'- -GGAGCG-GCUGCu--GGG-GGGCCUu-CGGa -5'
23698 5' -62.4 NC_005261.1 + 75555 0.66 0.626483
Target:  5'- uCCU-GCCGGCcAUCCCCgGGgcGCUg -3'
miRNA:   3'- -GGAgCGGCUGcUGGGGGgCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 94034 0.66 0.607032
Target:  5'- uUCUCGgcggcCCGGCGcGCCCCCCcagcggcgccGGGAGCa- -3'
miRNA:   3'- -GGAGC-----GGCUGC-UGGGGGG----------CCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 40471 0.66 0.626483
Target:  5'- aCCUUGUCGA-GGCUcaggCCCUGGGAGCg- -3'
miRNA:   3'- -GGAGCGGCUgCUGG----GGGGCCUUCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.