miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 34719 0.74 0.241573
Target:  5'- gCCUCagcgGUCGGCG-CCCCCUGGcGGCCg -3'
miRNA:   3'- -GGAG----CGGCUGCuGGGGGGCCuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 133784 0.66 0.665376
Target:  5'- cCCUCGUgCGGCGcauCCCgCCCGGGcuGCUc -3'
miRNA:   3'- -GGAGCG-GCUGCu--GGG-GGGCCUu-CGGa -5'
23698 5' -62.4 NC_005261.1 + 5702 0.71 0.344441
Target:  5'- uCCUCcCCGcCGGCCCCCuuucgCGGAgaGGCCg -3'
miRNA:   3'- -GGAGcGGCuGCUGGGGG-----GCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 87149 0.72 0.330015
Target:  5'- gCUCGCCGAUGGCCCgCUGGcgcgcguugaaGGGCUc -3'
miRNA:   3'- gGAGCGGCUGCUGGGgGGCC-----------UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 50783 0.72 0.322971
Target:  5'- aCCgCGgCGGCGGCCgCCCCGGc-GCCg -3'
miRNA:   3'- -GGaGCgGCUGCUGG-GGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 29780 0.72 0.309221
Target:  5'- aCgCGCCcAUGGCCUaCCCGGAGGCCg -3'
miRNA:   3'- gGaGCGGcUGCUGGG-GGGCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 131565 0.73 0.258703
Target:  5'- gCCgUCGcCCGGCuGCCCCCCGcgacggccGAGGCCUa -3'
miRNA:   3'- -GG-AGC-GGCUGcUGGGGGGC--------CUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 110941 0.74 0.252885
Target:  5'- aCCgagCGCCGcccgGCGGCCCaCCCGGGagAGCUg -3'
miRNA:   3'- -GGa--GCGGC----UGCUGGG-GGGCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 67760 0.74 0.252885
Target:  5'- cCCUCGCCGuccgagGCGcCgCCCCCGGccGCCc -3'
miRNA:   3'- -GGAGCGGC------UGCuG-GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 48643 0.74 0.252885
Target:  5'- cCCUgCGCCGGCc-CCCgCCCGGAgAGCCg -3'
miRNA:   3'- -GGA-GCGGCUGcuGGG-GGGCCU-UCGGa -5'
23698 5' -62.4 NC_005261.1 + 129111 0.74 0.247175
Target:  5'- uCCU-GCCGACagccuGGCCCCCUGGgGAGCCc -3'
miRNA:   3'- -GGAgCGGCUG-----CUGGGGGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 9535 1.09 0.000863
Target:  5'- gCCUCGCCGACGACCCCCCGGAAGCCUg -3'
miRNA:   3'- -GGAGCGGCUGCUGGGGGGCCUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 35686 0.75 0.220214
Target:  5'- cCCcCGCCGGCGAgCCCCggugggCCGGggGCUc -3'
miRNA:   3'- -GGaGCGGCUGCU-GGGG------GGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 134115 0.75 0.213128
Target:  5'- gCUCGCCGccgacuuccgccuCGACCCCCUGGGcugcGCCUg -3'
miRNA:   3'- gGAGCGGCu------------GCUGGGGGGCCUu---CGGA- -5'
23698 5' -62.4 NC_005261.1 + 19862 0.75 0.195802
Target:  5'- uCCUCGCgCGA-GACCCCgCCGGcGGGCCc -3'
miRNA:   3'- -GGAGCG-GCUgCUGGGG-GGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 114995 0.76 0.186717
Target:  5'- gCCggcCGCCGcggcccCGGCCCCgCGGAGGCCUc -3'
miRNA:   3'- -GGa--GCGGCu-----GCUGGGGgGCCUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 130653 0.77 0.150304
Target:  5'- gCUCGCCGACGcgcuGCUCCUCGGcGAGCCc -3'
miRNA:   3'- gGAGCGGCUGC----UGGGGGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 30926 0.78 0.136289
Target:  5'- cCCggcCGCCGGCGcaGCCCCUCGGggGCg- -3'
miRNA:   3'- -GGa--GCGGCUGC--UGGGGGGCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 9331 0.78 0.129741
Target:  5'- cCCgcCGCCGACGAgCCCaCCGGGAGCa- -3'
miRNA:   3'- -GGa-GCGGCUGCUgGGG-GGCCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 83018 0.79 0.106359
Target:  5'- gCCgUCGCCGGCG-CCCCCgGGAGGgCCg -3'
miRNA:   3'- -GG-AGCGGCUGCuGGGGGgCCUUC-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.