miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 36896 0.71 0.344441
Target:  5'- uCCUCGCCaaggcGCGACCCCgCGcuGGGCCg -3'
miRNA:   3'- -GGAGCGGc----UGCUGGGGgGCc-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 5702 0.71 0.344441
Target:  5'- uCCUCcCCGcCGGCCCCCuuucgCGGAgaGGCCg -3'
miRNA:   3'- -GGAGcGGCuGCUGGGGG-----GCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 29280 0.71 0.351822
Target:  5'- cCCgcuGCUGACG-CCCUCCGGcgAGGCCUg -3'
miRNA:   3'- -GGag-CGGCUGCuGGGGGGCC--UUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 84286 0.71 0.351822
Target:  5'- --cCGCCGGCGGCCccggCCCCGGcGGCg- -3'
miRNA:   3'- ggaGCGGCUGCUGG----GGGGCCuUCGga -5'
23698 5' -62.4 NC_005261.1 + 2275 0.71 0.366153
Target:  5'- uCCUCGCCGggcggcgccgccaGCGcCUCCCCGGGcAGCg- -3'
miRNA:   3'- -GGAGCGGC-------------UGCuGGGGGGCCU-UCGga -5'
23698 5' -62.4 NC_005261.1 + 72428 0.71 0.366918
Target:  5'- gCUCGCCG-CGcuuGCCCCCggCGGggGCg- -3'
miRNA:   3'- gGAGCGGCuGC---UGGGGG--GCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 38163 0.71 0.366918
Target:  5'- cCCgcgGCCGcagcACGGCUgCCUGGAGGCCUg -3'
miRNA:   3'- -GGag-CGGC----UGCUGGgGGGCCUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 87989 0.71 0.374632
Target:  5'- aCCUcgCGCCGGCucCuCCCCCGGcGGGCCc -3'
miRNA:   3'- -GGA--GCGGCUGcuG-GGGGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 31713 0.71 0.374632
Target:  5'- --aCGCCGugGACCCCgCGaacuGGCCg -3'
miRNA:   3'- ggaGCGGCugCUGGGGgGCcu--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 3915 0.7 0.382454
Target:  5'- cCCgcgcCGCCGGCGccgGCCUCCgGGuAGGCCa -3'
miRNA:   3'- -GGa---GCGGCUGC---UGGGGGgCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 115990 0.7 0.382454
Target:  5'- uCgUCGCUGACGAgCCgCCCGaGGcGGCCUg -3'
miRNA:   3'- -GgAGCGGCUGCUgGG-GGGC-CU-UCGGA- -5'
23698 5' -62.4 NC_005261.1 + 34610 0.7 0.389587
Target:  5'- gCCUgGCCGACGcgcuggaGCCCCUgauaggcgaGGAGGCCc -3'
miRNA:   3'- -GGAgCGGCUGC-------UGGGGGg--------CCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 104889 0.7 0.390385
Target:  5'- -aUCGCCGccGCGugCgCCCGGAcGCCc -3'
miRNA:   3'- ggAGCGGC--UGCugGgGGGCCUuCGGa -5'
23698 5' -62.4 NC_005261.1 + 9763 0.7 0.390385
Target:  5'- aCCgcgUGCCGACGACCCCgaaacccgCCGcGAGGUg- -3'
miRNA:   3'- -GGa--GCGGCUGCUGGGG--------GGC-CUUCGga -5'
23698 5' -62.4 NC_005261.1 + 78846 0.7 0.398422
Target:  5'- --aCGCCGGCGGCgCCCgccgCCGGAgcgcgAGCCg -3'
miRNA:   3'- ggaGCGGCUGCUG-GGG----GGCCU-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 55736 0.7 0.406565
Target:  5'- -gUCGCgGGCGugCUgCCGGAcGGCCUc -3'
miRNA:   3'- ggAGCGgCUGCugGGgGGCCU-UCGGA- -5'
23698 5' -62.4 NC_005261.1 + 56575 0.7 0.406565
Target:  5'- aCCUCGgCGGCGAcgacggcgcggaCCCCCCGcgcGCCa -3'
miRNA:   3'- -GGAGCgGCUGCU------------GGGGGGCcuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 1304 0.7 0.406565
Target:  5'- cCCgUCGCCGGCGGCggcacgcgCUCCGGGAcGCCg -3'
miRNA:   3'- -GG-AGCGGCUGCUGg-------GGGGCCUU-CGGa -5'
23698 5' -62.4 NC_005261.1 + 12719 0.7 0.406565
Target:  5'- gCUCGggcgcgcgggcCCGcCGGCCCCCUGGGcgGGCCc -3'
miRNA:   3'- gGAGC-----------GGCuGCUGGGGGGCCU--UCGGa -5'
23698 5' -62.4 NC_005261.1 + 1218 0.7 0.414811
Target:  5'- cCCcCGCCGAUGccgccgucgccGgCCCCgGGAAGCCc -3'
miRNA:   3'- -GGaGCGGCUGC-----------UgGGGGgCCUUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.