miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 30555 0.67 0.762208
Target:  5'- gAGGC-CGCcGCCgccgGGGCCUCGGACg -3'
miRNA:   3'- aUUCGcGCGaUGGag--CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 30728 0.66 0.817196
Target:  5'- cGGGC-CGCcagGCC-CGAGCCCC-AGCc -3'
miRNA:   3'- aUUCGcGCGa--UGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 30948 0.68 0.692884
Target:  5'- cGGGgGCGg-GCCUCGAGgCCCGccgcGACg -3'
miRNA:   3'- aUUCgCGCgaUGGAGCUCgGGGC----UUG- -5'
23699 3' -57.7 NC_005261.1 + 31859 0.67 0.752581
Target:  5'- -cGGCGCGU--CUUCGGGCCCgGcGCc -3'
miRNA:   3'- auUCGCGCGauGGAGCUCGGGgCuUG- -5'
23699 3' -57.7 NC_005261.1 + 32406 0.66 0.769827
Target:  5'- gGAGCGCGUgccGCCgccggcgacggGAGCCCCGccGGCc -3'
miRNA:   3'- aUUCGCGCGa--UGGag---------CUCGGGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 34418 0.66 0.807519
Target:  5'- -uGGCGCGCgGCCcgCGccuGCCCCugcugccGAACg -3'
miRNA:   3'- auUCGCGCGaUGGa-GCu--CGGGG-------CUUG- -5'
23699 3' -57.7 NC_005261.1 + 34682 0.72 0.461893
Target:  5'- -cAGCGCGCUGCgUgacggUGGGCCCCucGCa -3'
miRNA:   3'- auUCGCGCGAUGgA-----GCUCGGGGcuUG- -5'
23699 3' -57.7 NC_005261.1 + 35803 0.66 0.799456
Target:  5'- -uGGCGCGggacgGCCUgGAccccgGCCCCGAGa -3'
miRNA:   3'- auUCGCGCga---UGGAgCU-----CGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 36648 0.69 0.600438
Target:  5'- -cGGCGCGCggGCUUgGGGCCaggguCGAACg -3'
miRNA:   3'- auUCGCGCGa-UGGAgCUCGGg----GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 36985 0.66 0.781103
Target:  5'- --uGCGgGCUccaGCCg-GAGCCCgCGGGCu -3'
miRNA:   3'- auuCGCgCGA---UGGagCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 38173 0.67 0.762208
Target:  5'- -cAGCaCgGCUGCCUgGAGgCCUGGGCg -3'
miRNA:   3'- auUCGcG-CGAUGGAgCUCgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 38345 0.67 0.72309
Target:  5'- gGGGCGCGCacGCCcagCGGGCCUUugGGGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGa--GCUCGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 38523 0.69 0.631325
Target:  5'- --cGCGCGCUGgCUgCGcGCgCCGGGCa -3'
miRNA:   3'- auuCGCGCGAUgGA-GCuCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 39398 0.66 0.799456
Target:  5'- -uGGCG-GCgACC-CGAGCCCC-AGCg -3'
miRNA:   3'- auUCGCgCGaUGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 39435 0.74 0.365755
Target:  5'- -cGGCGCGU--CCgcaGGGCCCCGAGCc -3'
miRNA:   3'- auUCGCGCGauGGag-CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 40856 0.71 0.480775
Target:  5'- aGGGCGCGU--CCgCGAaggccGCCCCGAACa -3'
miRNA:   3'- aUUCGCGCGauGGaGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 41411 0.71 0.480775
Target:  5'- cGAGCGCGCcACgaCGAGUCCCuuggccGAGCa -3'
miRNA:   3'- aUUCGCGCGaUGgaGCUCGGGG------CUUG- -5'
23699 3' -57.7 NC_005261.1 + 42158 0.67 0.742845
Target:  5'- --cGCGCGaacGCCggaagCGAGCCgUGGACg -3'
miRNA:   3'- auuCGCGCga-UGGa----GCUCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 42241 0.67 0.752581
Target:  5'- --cGCGCGCagcGCCUCGAacuGCCCgCGcgaGGCg -3'
miRNA:   3'- auuCGCGCGa--UGGAGCU---CGGG-GC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 43141 0.67 0.713088
Target:  5'- --cGCGCGCgcgGCCUgCGcGCCgCCGAc- -3'
miRNA:   3'- auuCGCGCGa--UGGA-GCuCGG-GGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.