miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 15287 0.67 0.732023
Target:  5'- gGGGCGCGCggucgcgGCCUCcGGGUCgucggagCCGGGCc -3'
miRNA:   3'- aUUCGCGCGa------UGGAG-CUCGG-------GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 15847 0.66 0.816324
Target:  5'- cGAGCGCGCUagaggacgaggucGCggcaauggCUCGAGUCgCCGAcGCg -3'
miRNA:   3'- aUUCGCGCGA-------------UG--------GAGCUCGG-GGCU-UG- -5'
23699 3' -57.7 NC_005261.1 + 15897 0.67 0.72309
Target:  5'- cGGGCGCuuUAUCUCccGCCCCGcGCa -3'
miRNA:   3'- aUUCGCGcgAUGGAGcuCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 16202 0.67 0.713088
Target:  5'- gGGGcCGCGUgaugGCCUCGAGgCUCGGc- -3'
miRNA:   3'- aUUC-GCGCGa---UGGAGCUCgGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 16713 0.66 0.771719
Target:  5'- -cAGCGCGCgccgguacugGCCcucggCGAGCCgCgCGGGCg -3'
miRNA:   3'- auUCGCGCGa---------UGGa----GCUCGG-G-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 18393 0.67 0.752581
Target:  5'- aAAGC-CGCUGCggacgCGGGCCUCGGAg -3'
miRNA:   3'- aUUCGcGCGAUGga---GCUCGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 19764 0.69 0.631325
Target:  5'- cGGGCGCGg-GCCcCGucGCCUCGAACa -3'
miRNA:   3'- aUUCGCGCgaUGGaGCu-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 20118 0.67 0.733012
Target:  5'- aAGGCGCGCggGCC-CGcagcGGCuCCgCGAGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGaGC----UCG-GG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 20250 0.67 0.742845
Target:  5'- --cGCGCGCU-CCaUGGGCgCCGAGa -3'
miRNA:   3'- auuCGCGCGAuGGaGCUCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 20292 0.76 0.267313
Target:  5'- gGGGCGCGCUugCggCagaaaaacggcgacuGGGCCCCGAGCc -3'
miRNA:   3'- aUUCGCGCGAugGa-G---------------CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 21762 0.76 0.277689
Target:  5'- gGAGCGCGC-GCCgggCGAGCCgCCGcGGCg -3'
miRNA:   3'- aUUCGCGCGaUGGa--GCUCGG-GGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 21829 0.66 0.799456
Target:  5'- cGGGCGCGCgUGCgggCGGgcucGCCCCGcAGCu -3'
miRNA:   3'- aUUCGCGCG-AUGga-GCU----CGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 23483 0.68 0.651932
Target:  5'- cGAGUGCGCgggcccGCCUgggcaggcgCGGGCCCUGGGa -3'
miRNA:   3'- aUUCGCGCGa-----UGGA---------GCUCGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 23742 0.66 0.799456
Target:  5'- gAGGCGCGU--CCgggaggggCGGgcuuGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGauGGa-------GCU----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 28132 0.67 0.72309
Target:  5'- gAGGCGgGCgcCCUCGGcGCCCCc--- -3'
miRNA:   3'- aUUCGCgCGauGGAGCU-CGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 28580 0.73 0.398241
Target:  5'- gAGGCGCGCgagcGCCggCGGGCCgcccgcgCCGAGCu -3'
miRNA:   3'- aUUCGCGCGa---UGGa-GCUCGG-------GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 29211 0.67 0.762208
Target:  5'- cGGGCGCGCga-CUgGGGCCCgCGcaGGCu -3'
miRNA:   3'- aUUCGCGCGaugGAgCUCGGG-GC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 29534 0.68 0.692884
Target:  5'- aGAGCGCGaaGCUcgCGGGCCCgGAccuGCa -3'
miRNA:   3'- aUUCGCGCgaUGGa-GCUCGGGgCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 29876 0.7 0.59018
Target:  5'- -cGGCGcCGCUGCCgCcAGCgCCCGGGCc -3'
miRNA:   3'- auUCGC-GCGAUGGaGcUCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 29909 0.66 0.817196
Target:  5'- -cAGCGCGCgagcgGCUgcgCGAGCUggCGGACg -3'
miRNA:   3'- auUCGCGCGa----UGGa--GCUCGGg-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.