miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 94 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 1821 0.66 0.771719
Target:  5'- aGAGcCGCGCguaagcgGCCUCGgcgcgcgcgaaGGCgCCGGGCc -3'
miRNA:   3'- aUUC-GCGCGa------UGGAGC-----------UCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 2388 0.77 0.246308
Target:  5'- -cGGCGCGCUggcggcgagcgcGCCcgCGGGCCCCGcGCg -3'
miRNA:   3'- auUCGCGCGA------------UGGa-GCUCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 2690 0.67 0.762208
Target:  5'- -cGGCGCGCcggcuuuugGCCggcgcCGGGCCCCuGGCc -3'
miRNA:   3'- auUCGCGCGa--------UGGa----GCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 2754 0.66 0.790352
Target:  5'- cGGGcCGuCGCggcggGCCUCGAGgcccgcCCCCGAGg -3'
miRNA:   3'- aUUC-GC-GCGa----UGGAGCUC------GGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 3356 0.75 0.291106
Target:  5'- -cGGCGCGCcgGCCUUcaGGGCCgCGAGCg -3'
miRNA:   3'- auUCGCGCGa-UGGAG--CUCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 3820 0.79 0.17835
Target:  5'- --cGCGCGCUGCCgCGGGC-CCGGGCg -3'
miRNA:   3'- auuCGCGCGAUGGaGCUCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 4159 0.71 0.509778
Target:  5'- cAGGCGCGCcagcUGCaggucCGGGCCCgCGAGCu -3'
miRNA:   3'- aUUCGCGCG----AUGga---GCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 4411 0.67 0.733012
Target:  5'- -cGGCGCGCUGCCgggcCaGGCCUCGc-- -3'
miRNA:   3'- auUCGCGCGAUGGa---GcUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 4914 0.69 0.631325
Target:  5'- -cGGCG-GCUGCCUCcgccgcGGCCgCGAGCg -3'
miRNA:   3'- auUCGCgCGAUGGAGc-----UCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 5147 0.68 0.692884
Target:  5'- --cGCGCGCcucgGCCcggCGGGCCgcgUCGAGCa -3'
miRNA:   3'- auuCGCGCGa---UGGa--GCUCGG---GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 5589 0.71 0.529515
Target:  5'- cGAGgGCGCccGCCUCGAGgCCCCc--- -3'
miRNA:   3'- aUUCgCGCGa-UGGAGCUC-GGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 9219 1.07 0.002155
Target:  5'- aUAAGCGCGCUACCUCGAGCCCCGAACc -3'
miRNA:   3'- -AUUCGCGCGAUGGAGCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 10505 0.75 0.326854
Target:  5'- --uGCGCGCggccGCCgcugCGGGCCCCGcGGCg -3'
miRNA:   3'- auuCGCGCGa---UGGa---GCUCGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 10709 0.66 0.771719
Target:  5'- --cGCGgGCcGCCUcCGGGCCCCc--- -3'
miRNA:   3'- auuCGCgCGaUGGA-GCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 11236 0.67 0.722093
Target:  5'- cGGGCGCGCUuccuCCUCGAucucgugGUCUCGGucGCu -3'
miRNA:   3'- aUUCGCGCGAu---GGAGCU-------CGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 11639 0.72 0.443409
Target:  5'- --cGCgGCGCccCCUCGAGCCCCGc-- -3'
miRNA:   3'- auuCG-CGCGauGGAGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 12019 0.69 0.600438
Target:  5'- gAAGCGCucgcccGCgacGCgCUCGAGCCCCagccgGAGCa -3'
miRNA:   3'- aUUCGCG------CGa--UG-GAGCUCGGGG-----CUUG- -5'
23699 3' -57.7 NC_005261.1 + 12722 0.71 0.51961
Target:  5'- cGGGCGCGCggGCC-CGccGGCCCCcuGGGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGaGC--UCGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 13044 0.68 0.692884
Target:  5'- aGGGCGCGggGCCgcgCGcGCCCCugccGGGCg -3'
miRNA:   3'- aUUCGCGCgaUGGa--GCuCGGGG----CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.