miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 9219 1.07 0.002155
Target:  5'- aUAAGCGCGCUACCUCGAGCCCCGAACc -3'
miRNA:   3'- -AUUCGCGCGAUGGAGCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 3820 0.79 0.17835
Target:  5'- --cGCGCGCUGCCgCGGGC-CCGGGCg -3'
miRNA:   3'- auuCGCGCGAUGGaGCUCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 102772 0.78 0.192384
Target:  5'- cGAGCGCGCccgagGCCUCGccccGGCCgCGAGCg -3'
miRNA:   3'- aUUCGCGCGa----UGGAGC----UCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 117383 0.78 0.197273
Target:  5'- gAGGCGCGCUGCUUCGgcggGGCgCCCGAc- -3'
miRNA:   3'- aUUCGCGCGAUGGAGC----UCG-GGGCUug -5'
23699 3' -57.7 NC_005261.1 + 46578 0.78 0.207377
Target:  5'- cGAGCGCG--GCCUCGcgcgacacGGCCCCGGGCa -3'
miRNA:   3'- aUUCGCGCgaUGGAGC--------UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 44729 0.78 0.212594
Target:  5'- -cAGgGCGCUGCagcUGGGCCCCGAGCu -3'
miRNA:   3'- auUCgCGCGAUGga-GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 51415 0.77 0.240396
Target:  5'- --cGCGCGCccaccGCCUgcUGGGCCCCGGGCg -3'
miRNA:   3'- auuCGCGCGa----UGGA--GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 2388 0.77 0.246308
Target:  5'- -cGGCGCGCUggcggcgagcgcGCCcgCGGGCCCCGcGCg -3'
miRNA:   3'- auUCGCGCGA------------UGGa-GCUCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 20292 0.76 0.267313
Target:  5'- gGGGCGCGCUugCggCagaaaaacggcgacuGGGCCCCGAGCc -3'
miRNA:   3'- aUUCGCGCGAugGa-G---------------CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 21762 0.76 0.277689
Target:  5'- gGAGCGCGC-GCCgggCGAGCCgCCGcGGCg -3'
miRNA:   3'- aUUCGCGCGaUGGa--GCUCGG-GGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 92610 0.76 0.277689
Target:  5'- -cGGCGCG-UGCCg-GGGCCCCGGGCg -3'
miRNA:   3'- auUCGCGCgAUGGagCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 3356 0.75 0.291106
Target:  5'- -cGGCGCGCcgGCCUUcaGGGCCgCGAGCg -3'
miRNA:   3'- auUCGCGCGa-UGGAG--CUCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 108177 0.75 0.298004
Target:  5'- aGGGCGCGCgGCCgCG-GCUCCGGGCg -3'
miRNA:   3'- aUUCGCGCGaUGGaGCuCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 105485 0.75 0.319452
Target:  5'- gGGGCGCGCggGCCcCGAGCCCgcCGAGa -3'
miRNA:   3'- aUUCGCGCGa-UGGaGCUCGGG--GCUUg -5'
23699 3' -57.7 NC_005261.1 + 10505 0.75 0.326854
Target:  5'- --uGCGCGCggccGCCgcugCGGGCCCCGcGGCg -3'
miRNA:   3'- auuCGCGCGa---UGGa---GCUCGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 93590 0.74 0.342038
Target:  5'- --cGCGCGCUcggcgACCUCGccgucGCCCCGggUc -3'
miRNA:   3'- auuCGCGCGA-----UGGAGCu----CGGGGCuuG- -5'
23699 3' -57.7 NC_005261.1 + 75847 0.74 0.349819
Target:  5'- gGGGCGCGCggcGCCgacggCG-GCCCCGAcgGCg -3'
miRNA:   3'- aUUCGCGCGa--UGGa----GCuCGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 39435 0.74 0.365755
Target:  5'- -cGGCGCGU--CCgcaGGGCCCCGAGCc -3'
miRNA:   3'- auUCGCGCGauGGag-CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 69371 0.74 0.365755
Target:  5'- --cGCGCGCUggACCUCGAgaugaccgccGUCCUGAGCc -3'
miRNA:   3'- auuCGCGCGA--UGGAGCU----------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 88492 0.74 0.365755
Target:  5'- gGAGCGCGCcGCgCUCGAcccgcGCUUCGAGCg -3'
miRNA:   3'- aUUCGCGCGaUG-GAGCU-----CGGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.