miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 48547 0.74 0.365755
Target:  5'- --uGCGUGCUcuucuGCagcCGGGCCCCGAACa -3'
miRNA:   3'- auuCGCGCGA-----UGga-GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 28580 0.73 0.398241
Target:  5'- gAGGCGCGCgagcGCCggCGGGCCgcccgcgCCGAGCu -3'
miRNA:   3'- aUUCGCGCGa---UGGa-GCUCGG-------GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 55740 0.73 0.399098
Target:  5'- cGGGCGUGCUGCCggaCG-GCCUCGAcGCg -3'
miRNA:   3'- aUUCGCGCGAUGGa--GCuCGGGGCU-UG- -5'
23699 3' -57.7 NC_005261.1 + 76475 0.73 0.399098
Target:  5'- -cGGCGCGCgcgcggACCcCGAGCCCUcGGCg -3'
miRNA:   3'- auUCGCGCGa-----UGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 83757 0.73 0.399098
Target:  5'- -cGGCGCGCcacgGCCgggUCGcAGCgCCCGAGCa -3'
miRNA:   3'- auUCGCGCGa---UGG---AGC-UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 49101 0.72 0.443409
Target:  5'- cUGAGCGCGCgcagcagcuCCUCGAGCgCggCGGGCg -3'
miRNA:   3'- -AUUCGCGCGau-------GGAGCUCGgG--GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 11639 0.72 0.443409
Target:  5'- --cGCgGCGCccCCUCGAGCCCCGc-- -3'
miRNA:   3'- auuCG-CGCGauGGAGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 49868 0.72 0.452599
Target:  5'- gAAGCGCGCgg---CGAGCUCCGAGa -3'
miRNA:   3'- aUUCGCGCGauggaGCUCGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 94844 0.72 0.452599
Target:  5'- -cGGCGCGCcugGCCUCGGcGCucgcgcacggCCCGGGCg -3'
miRNA:   3'- auUCGCGCGa--UGGAGCU-CG----------GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 131775 0.72 0.461893
Target:  5'- cGGGCGCGCcGCU--GGGCCCCGAc- -3'
miRNA:   3'- aUUCGCGCGaUGGagCUCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 84375 0.72 0.461893
Target:  5'- --cGCGgGCUcgGCCUCGGccgccGCCUCGAGCu -3'
miRNA:   3'- auuCGCgCGA--UGGAGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 34682 0.72 0.461893
Target:  5'- -cAGCGCGCUGCgUgacggUGGGCCCCucGCa -3'
miRNA:   3'- auUCGCGCGAUGgA-----GCUCGGGGcuUG- -5'
23699 3' -57.7 NC_005261.1 + 106960 0.72 0.461893
Target:  5'- cGGGCGCGCUccGCCUCGGcgcgcGCgCCGcGCa -3'
miRNA:   3'- aUUCGCGCGA--UGGAGCU-----CGgGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 97764 0.72 0.4694
Target:  5'- -cGGCgGCGCgGCCggcaucgacuccCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 97863 0.72 0.4694
Target:  5'- -cGGCaGCGCgGCCggcaucgauuucCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 134110 0.71 0.477919
Target:  5'- --cGCGCGCUcgccgccgacuuccGCCUCGAcCCCCuGGGCu -3'
miRNA:   3'- auuCGCGCGA--------------UGGAGCUcGGGG-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 106476 0.71 0.480775
Target:  5'- aGAGCGCcggGCUccCCUCGucGCCCUGGACu -3'
miRNA:   3'- aUUCGCG---CGAu-GGAGCu-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 137777 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 40856 0.71 0.480775
Target:  5'- aGGGCGCGU--CCgCGAaggccGCCCCGAACa -3'
miRNA:   3'- aUUCGCGCGauGGaGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 41411 0.71 0.480775
Target:  5'- cGAGCGCGCcACgaCGAGUCCCuuggccGAGCa -3'
miRNA:   3'- aUUCGCGCGaUGgaGCUCGGGG------CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.