miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 23742 0.66 0.799456
Target:  5'- gAGGCGCGU--CCgggaggggCGGgcuuGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGauGGa-------GCU----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 130693 0.66 0.790352
Target:  5'- --cGCGUGCUG-CUCGAGCaCCUcgccgaGGACg -3'
miRNA:   3'- auuCGCGCGAUgGAGCUCG-GGG------CUUG- -5'
23699 3' -57.7 NC_005261.1 + 16713 0.66 0.771719
Target:  5'- -cAGCGCGCgccgguacugGCCcucggCGAGCCgCgCGGGCg -3'
miRNA:   3'- auUCGCGCGa---------UGGa----GCUCGG-G-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 32406 0.66 0.769827
Target:  5'- gGAGCGCGUgccGCCgccggcgacggGAGCCCCGccGGCc -3'
miRNA:   3'- aUUCGCGCGa--UGGag---------CUCGGGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 76076 0.66 0.808407
Target:  5'- aGGGCGgGCUgcugcGCCUCGuGGCgCUgGAGCu -3'
miRNA:   3'- aUUCGCgCGA-----UGGAGC-UCG-GGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 99555 0.66 0.771719
Target:  5'- -cGGCGCGCcaggaagGCgUCGuAGCUCUGGGCc -3'
miRNA:   3'- auUCGCGCGa------UGgAGC-UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 133362 0.66 0.799456
Target:  5'- --cGCGCagggcuucgGCUGCCUgCGcgcGGCCCaCGGGCg -3'
miRNA:   3'- auuCGCG---------CGAUGGA-GC---UCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 96288 0.66 0.799456
Target:  5'- -uGGCGCgGCUucgGCCUCG-GCCgCGcGCa -3'
miRNA:   3'- auUCGCG-CGA---UGGAGCuCGGgGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 119960 0.66 0.799456
Target:  5'- ---cCGCGC-ACCcgccgucuccgUCGAGCCCCGGccgACg -3'
miRNA:   3'- auucGCGCGaUGG-----------AGCUCGGGGCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 46995 0.66 0.799456
Target:  5'- -cAGCGCGCgccgcGCCgccgCGAugcggcgguccaGCCCCGcGACg -3'
miRNA:   3'- auUCGCGCGa----UGGa---GCU------------CGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 10709 0.66 0.771719
Target:  5'- --cGCGgGCcGCCUcCGGGCCCCc--- -3'
miRNA:   3'- auuCGCgCGaUGGA-GCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 105140 0.66 0.808407
Target:  5'- -cGGCGCGCgcagguCCUCGcGGCUCgaGGGCg -3'
miRNA:   3'- auUCGCGCGau----GGAGC-UCGGGg-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 48665 0.66 0.808407
Target:  5'- aGAGcCGCGCggcaacggcgACUaCGGGCCCgCGGGCc -3'
miRNA:   3'- aUUC-GCGCGa---------UGGaGCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 112858 0.66 0.771719
Target:  5'- -cAGCGCGCggACCcCGAcGCCCaCGGc- -3'
miRNA:   3'- auUCGCGCGa-UGGaGCU-CGGG-GCUug -5'
23699 3' -57.7 NC_005261.1 + 35803 0.66 0.799456
Target:  5'- -uGGCGCGggacgGCCUgGAccccgGCCCCGAGa -3'
miRNA:   3'- auUCGCGCga---UGGAgCU-----CGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 68973 0.66 0.790352
Target:  5'- --uGCGCGCcACCgcggcccuuuUCGGGCCgCgCGGGCg -3'
miRNA:   3'- auuCGCGCGaUGG----------AGCUCGG-G-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 66015 0.66 0.794012
Target:  5'- --cGCGCGCcACCgccggcgcgucguagUCGgcggccacggccAGCCCCGGGCc -3'
miRNA:   3'- auuCGCGCGaUGG---------------AGC------------UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 15847 0.66 0.816324
Target:  5'- cGAGCGCGCUagaggacgaggucGCggcaauggCUCGAGUCgCCGAcGCg -3'
miRNA:   3'- aUUCGCGCGA-------------UG--------GAGCUCGG-GGCU-UG- -5'
23699 3' -57.7 NC_005261.1 + 100567 0.66 0.808407
Target:  5'- -cAGCGUGCacaccgccGCCUCGucGCCCagGAGCg -3'
miRNA:   3'- auUCGCGCGa-------UGGAGCu-CGGGg-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 62308 0.66 0.790352
Target:  5'- cGGGCGCGCggcgGCCccgCGGuCCCCcAGCg -3'
miRNA:   3'- aUUCGCGCGa---UGGa--GCUcGGGGcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.