Results 1 - 20 of 191 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 68973 | 0.66 | 0.790352 |
Target: 5'- --uGCGCGCcACCgcggcccuuuUCGGGCCgCgCGGGCg -3' miRNA: 3'- auuCGCGCGaUGG----------AGCUCGG-G-GCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 130693 | 0.66 | 0.790352 |
Target: 5'- --cGCGUGCUG-CUCGAGCaCCUcgccgaGGACg -3' miRNA: 3'- auuCGCGCGAUgGAGCUCG-GGG------CUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 66015 | 0.66 | 0.794012 |
Target: 5'- --cGCGCGCcACCgccggcgcgucguagUCGgcggccacggccAGCCCCGGGCc -3' miRNA: 3'- auuCGCGCGaUGG---------------AGC------------UCGGGGCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 36985 | 0.66 | 0.781103 |
Target: 5'- --uGCGgGCUccaGCCg-GAGCCCgCGGGCu -3' miRNA: 3'- auuCGCgCGA---UGGagCUCGGG-GCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 102487 | 0.66 | 0.781103 |
Target: 5'- -cGGCGCGCcGCCgCGccAGCgCCUGGGCc -3' miRNA: 3'- auUCGCGCGaUGGaGC--UCG-GGGCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 16713 | 0.66 | 0.771719 |
Target: 5'- -cAGCGCGCgccgguacugGCCcucggCGAGCCgCgCGGGCg -3' miRNA: 3'- auUCGCGCGa---------UGGa----GCUCGG-G-GCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 2754 | 0.66 | 0.790352 |
Target: 5'- cGGGcCGuCGCggcggGCCUCGAGgcccgcCCCCGAGg -3' miRNA: 3'- aUUC-GC-GCGa----UGGAGCUC------GGGGCUUg -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 80138 | 0.66 | 0.781103 |
Target: 5'- -cGGCGcCGCUACCaccggcggCGAacaGCCCCucGAGCg -3' miRNA: 3'- auUCGC-GCGAUGGa-------GCU---CGGGG--CUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 10709 | 0.66 | 0.771719 |
Target: 5'- --cGCGgGCcGCCUcCGGGCCCCc--- -3' miRNA: 3'- auuCGCgCGaUGGA-GCUCGGGGcuug -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 99555 | 0.66 | 0.771719 |
Target: 5'- -cGGCGCGCcaggaagGCgUCGuAGCUCUGGGCc -3' miRNA: 3'- auUCGCGCGa------UGgAGC-UCGGGGCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 62308 | 0.66 | 0.790352 |
Target: 5'- cGGGCGCGCggcgGCCccgCGGuCCCCcAGCg -3' miRNA: 3'- aUUCGCGCGa---UGGa--GCUcGGGGcUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 30728 | 0.66 | 0.817196 |
Target: 5'- cGGGC-CGCcagGCC-CGAGCCCC-AGCc -3' miRNA: 3'- aUUCGcGCGa--UGGaGCUCGGGGcUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 32406 | 0.66 | 0.769827 |
Target: 5'- gGAGCGCGUgccGCCgccggcgacggGAGCCCCGccGGCc -3' miRNA: 3'- aUUCGCGCGa--UGGag---------CUCGGGGC--UUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 35803 | 0.66 | 0.799456 |
Target: 5'- -uGGCGCGggacgGCCUgGAccccgGCCCCGAGa -3' miRNA: 3'- auUCGCGCga---UGGAgCU-----CGGGGCUUg -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 126465 | 0.66 | 0.781103 |
Target: 5'- -cAGCGCGCUcGCCUCGcGGUaguaCCGcGCc -3' miRNA: 3'- auUCGCGCGA-UGGAGC-UCGg---GGCuUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 112858 | 0.66 | 0.771719 |
Target: 5'- -cAGCGCGCggACCcCGAcGCCCaCGGc- -3' miRNA: 3'- auUCGCGCGa-UGGaGCU-CGGG-GCUug -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 99232 | 0.66 | 0.781103 |
Target: 5'- cAGGCGCGUcgGCgUCGcGCCcgCCGGGCc -3' miRNA: 3'- aUUCGCGCGa-UGgAGCuCGG--GGCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 1821 | 0.66 | 0.771719 |
Target: 5'- aGAGcCGCGCguaagcgGCCUCGgcgcgcgcgaaGGCgCCGGGCc -3' miRNA: 3'- aUUC-GCGCGa------UGGAGC-----------UCGgGGCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 86093 | 0.66 | 0.771719 |
Target: 5'- --cGCGCGU--UCUCGucGGCgCCCGGGCg -3' miRNA: 3'- auuCGCGCGauGGAGC--UCG-GGGCUUG- -5' |
|||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 71225 | 0.66 | 0.775488 |
Target: 5'- --cGCGCGCgcacgcgGCCcucggcggcgcagcCGAGCCCCGcGCc -3' miRNA: 3'- auuCGCGCGa------UGGa-------------GCUCGGGGCuUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home