Results 1 - 20 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 30728 | 0.66 | 0.817196 |
Target: 5'- cGGGC-CGCcagGCC-CGAGCCCC-AGCc -3' miRNA: 3'- aUUCGcGCGa--UGGaGCUCGGGGcUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 108177 | 0.75 | 0.298004 |
Target: 5'- aGGGCGCGCgGCCgCG-GCUCCGGGCg -3' miRNA: 3'- aUUCGCGCGaUGGaGCuCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 105485 | 0.75 | 0.319452 |
Target: 5'- gGGGCGCGCggGCCcCGAGCCCgcCGAGa -3' miRNA: 3'- aUUCGCGCGa-UGGaGCUCGGG--GCUUg -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 10505 | 0.75 | 0.326854 |
Target: 5'- --uGCGCGCggccGCCgcugCGGGCCCCGcGGCg -3' miRNA: 3'- auuCGCGCGa---UGGa---GCUCGGGGC-UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 93590 | 0.74 | 0.342038 |
Target: 5'- --cGCGCGCUcggcgACCUCGccgucGCCCCGggUc -3' miRNA: 3'- auuCGCGCGA-----UGGAGCu----CGGGGCuuG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 75847 | 0.74 | 0.349819 |
Target: 5'- gGGGCGCGCggcGCCgacggCG-GCCCCGAcgGCg -3' miRNA: 3'- aUUCGCGCGa--UGGa----GCuCGGGGCU--UG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 48547 | 0.74 | 0.365755 |
Target: 5'- --uGCGUGCUcuucuGCagcCGGGCCCCGAACa -3' miRNA: 3'- auuCGCGCGA-----UGga-GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 39435 | 0.74 | 0.365755 |
Target: 5'- -cGGCGCGU--CCgcaGGGCCCCGAGCc -3' miRNA: 3'- auUCGCGCGauGGag-CUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 69371 | 0.74 | 0.365755 |
Target: 5'- --cGCGCGCUggACCUCGAgaugaccgccGUCCUGAGCc -3' miRNA: 3'- auuCGCGCGA--UGGAGCU----------CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 3356 | 0.75 | 0.291106 |
Target: 5'- -cGGCGCGCcgGCCUUcaGGGCCgCGAGCg -3' miRNA: 3'- auUCGCGCGa-UGGAG--CUCGGgGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 21762 | 0.76 | 0.277689 |
Target: 5'- gGAGCGCGC-GCCgggCGAGCCgCCGcGGCg -3' miRNA: 3'- aUUCGCGCGaUGGa--GCUCGG-GGC-UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 92610 | 0.76 | 0.277689 |
Target: 5'- -cGGCGCG-UGCCg-GGGCCCCGGGCg -3' miRNA: 3'- auUCGCGCgAUGGagCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 3820 | 0.79 | 0.17835 |
Target: 5'- --cGCGCGCUGCCgCGGGC-CCGGGCg -3' miRNA: 3'- auuCGCGCGAUGGaGCUCGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 102772 | 0.78 | 0.192384 |
Target: 5'- cGAGCGCGCccgagGCCUCGccccGGCCgCGAGCg -3' miRNA: 3'- aUUCGCGCGa----UGGAGC----UCGGgGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 117383 | 0.78 | 0.197273 |
Target: 5'- gAGGCGCGCUGCUUCGgcggGGCgCCCGAc- -3' miRNA: 3'- aUUCGCGCGAUGGAGC----UCG-GGGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 46578 | 0.78 | 0.207377 |
Target: 5'- cGAGCGCG--GCCUCGcgcgacacGGCCCCGGGCa -3' miRNA: 3'- aUUCGCGCgaUGGAGC--------UCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 44729 | 0.78 | 0.212594 |
Target: 5'- -cAGgGCGCUGCagcUGGGCCCCGAGCu -3' miRNA: 3'- auUCgCGCGAUGga-GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 51415 | 0.77 | 0.240396 |
Target: 5'- --cGCGCGCccaccGCCUgcUGGGCCCCGGGCg -3' miRNA: 3'- auuCGCGCGa----UGGA--GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 2388 | 0.77 | 0.246308 |
Target: 5'- -cGGCGCGCUggcggcgagcgcGCCcgCGGGCCCCGcGCg -3' miRNA: 3'- auUCGCGCGA------------UGGa-GCUCGGGGCuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 20292 | 0.76 | 0.267313 |
Target: 5'- gGGGCGCGCUugCggCagaaaaacggcgacuGGGCCCCGAGCc -3' miRNA: 3'- aUUCGCGCGAugGa-G---------------CUCGGGGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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