miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 39398 0.66 0.799456
Target:  5'- -uGGCG-GCgACC-CGAGCCCC-AGCg -3'
miRNA:   3'- auUCGCgCGaUGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 35803 0.66 0.799456
Target:  5'- -uGGCGCGggacgGCCUgGAccccgGCCCCGAGa -3'
miRNA:   3'- auUCGCGCga---UGGAgCU-----CGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 23742 0.66 0.799456
Target:  5'- gAGGCGCGU--CCgggaggggCGGgcuuGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGauGGa-------GCU----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 66015 0.66 0.794012
Target:  5'- --cGCGCGCcACCgccggcgcgucguagUCGgcggccacggccAGCCCCGGGCc -3'
miRNA:   3'- auuCGCGCGaUGG---------------AGC------------UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 2754 0.66 0.790352
Target:  5'- cGGGcCGuCGCggcggGCCUCGAGgcccgcCCCCGAGg -3'
miRNA:   3'- aUUC-GC-GCGa----UGGAGCUC------GGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 62308 0.66 0.790352
Target:  5'- cGGGCGCGCggcgGCCccgCGGuCCCCcAGCg -3'
miRNA:   3'- aUUCGCGCGa---UGGa--GCUcGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 130693 0.66 0.790352
Target:  5'- --cGCGUGCUG-CUCGAGCaCCUcgccgaGGACg -3'
miRNA:   3'- auuCGCGCGAUgGAGCUCG-GGG------CUUG- -5'
23699 3' -57.7 NC_005261.1 + 68973 0.66 0.790352
Target:  5'- --uGCGCGCcACCgcggcccuuuUCGGGCCgCgCGGGCg -3'
miRNA:   3'- auuCGCGCGaUGG----------AGCUCGG-G-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 82662 0.66 0.781103
Target:  5'- --cGCGCGgaugagcGCCUCGAGCCgcucgUCGGGCg -3'
miRNA:   3'- auuCGCGCga-----UGGAGCUCGG-----GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 99232 0.66 0.781103
Target:  5'- cAGGCGCGUcgGCgUCGcGCCcgCCGGGCc -3'
miRNA:   3'- aUUCGCGCGa-UGgAGCuCGG--GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 102487 0.66 0.781103
Target:  5'- -cGGCGCGCcGCCgCGccAGCgCCUGGGCc -3'
miRNA:   3'- auUCGCGCGaUGGaGC--UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 80138 0.66 0.781103
Target:  5'- -cGGCGcCGCUACCaccggcggCGAacaGCCCCucGAGCg -3'
miRNA:   3'- auUCGC-GCGAUGGa-------GCU---CGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 126465 0.66 0.781103
Target:  5'- -cAGCGCGCUcGCCUCGcGGUaguaCCGcGCc -3'
miRNA:   3'- auUCGCGCGA-UGGAGC-UCGg---GGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 36985 0.66 0.781103
Target:  5'- --uGCGgGCUccaGCCg-GAGCCCgCGGGCu -3'
miRNA:   3'- auuCGCgCGA---UGGagCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 71225 0.66 0.775488
Target:  5'- --cGCGCGCgcacgcgGCCcucggcggcgcagcCGAGCCCCGcGCc -3'
miRNA:   3'- auuCGCGCGa------UGGa-------------GCUCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 86093 0.66 0.771719
Target:  5'- --cGCGCGU--UCUCGucGGCgCCCGGGCg -3'
miRNA:   3'- auuCGCGCGauGGAGC--UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 1821 0.66 0.771719
Target:  5'- aGAGcCGCGCguaagcgGCCUCGgcgcgcgcgaaGGCgCCGGGCc -3'
miRNA:   3'- aUUC-GCGCGa------UGGAGC-----------UCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 112858 0.66 0.771719
Target:  5'- -cAGCGCGCggACCcCGAcGCCCaCGGc- -3'
miRNA:   3'- auUCGCGCGa-UGGaGCU-CGGG-GCUug -5'
23699 3' -57.7 NC_005261.1 + 99555 0.66 0.771719
Target:  5'- -cGGCGCGCcaggaagGCgUCGuAGCUCUGGGCc -3'
miRNA:   3'- auUCGCGCGa------UGgAGC-UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 10709 0.66 0.771719
Target:  5'- --cGCGgGCcGCCUcCGGGCCCCc--- -3'
miRNA:   3'- auuCGCgCGaUGGA-GCUCGGGGcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.