miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 10709 0.66 0.771719
Target:  5'- --cGCGgGCcGCCUcCGGGCCCCc--- -3'
miRNA:   3'- auuCGCgCGaUGGA-GCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 32406 0.66 0.769827
Target:  5'- gGAGCGCGUgccGCCgccggcgacggGAGCCCCGccGGCc -3'
miRNA:   3'- aUUCGCGCGa--UGGag---------CUCGGGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 38173 0.67 0.762208
Target:  5'- -cAGCaCgGCUGCCUgGAGgCCUGGGCg -3'
miRNA:   3'- auUCGcG-CGAUGGAgCUCgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 48287 0.67 0.762208
Target:  5'- cAAGCGcCGCUuccagcgagGCCUCGgggggcgcgucGGgCCCGGGCu -3'
miRNA:   3'- aUUCGC-GCGA---------UGGAGC-----------UCgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 30555 0.67 0.762208
Target:  5'- gAGGC-CGCcGCCgccgGGGCCUCGGACg -3'
miRNA:   3'- aUUCGcGCGaUGGag--CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 2690 0.67 0.762208
Target:  5'- -cGGCGCGCcggcuuuugGCCggcgcCGGGCCCCuGGCc -3'
miRNA:   3'- auUCGCGCGa--------UGGa----GCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 29211 0.67 0.762208
Target:  5'- cGGGCGCGCga-CUgGGGCCCgCGcaGGCu -3'
miRNA:   3'- aUUCGCGCGaugGAgCUCGGG-GC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 60404 0.67 0.762208
Target:  5'- -uGGCGCcggGCcgGCC-CGGGCCCgGGGCc -3'
miRNA:   3'- auUCGCG---CGa-UGGaGCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 82992 0.67 0.762208
Target:  5'- gAGGCG-GCcGCCUCGcGCaCCGAGCc -3'
miRNA:   3'- aUUCGCgCGaUGGAGCuCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 90800 0.67 0.762208
Target:  5'- --cGCGCGCUACCgCGuGCgCUGGu- -3'
miRNA:   3'- auuCGCGCGAUGGaGCuCGgGGCUug -5'
23699 3' -57.7 NC_005261.1 + 99680 0.67 0.759332
Target:  5'- -cAGCGCGCUGCC-CGggaugaggcgcgccAGCUCCGccACg -3'
miRNA:   3'- auUCGCGCGAUGGaGC--------------UCGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 31859 0.67 0.752581
Target:  5'- -cGGCGCGU--CUUCGGGCCCgGcGCc -3'
miRNA:   3'- auUCGCGCGauGGAGCUCGGGgCuUG- -5'
23699 3' -57.7 NC_005261.1 + 42241 0.67 0.752581
Target:  5'- --cGCGCGCagcGCCUCGAacuGCCCgCGcgaGGCg -3'
miRNA:   3'- auuCGCGCGa--UGGAGCU---CGGG-GC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 51897 0.67 0.752581
Target:  5'- -cGGCGCGCUACaUCG---CCCGGGCg -3'
miRNA:   3'- auUCGCGCGAUGgAGCucgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 130659 0.67 0.752581
Target:  5'- --cGaCGCGCUGCUccucggCGAGCCCCu--- -3'
miRNA:   3'- auuC-GCGCGAUGGa-----GCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 118637 0.67 0.752581
Target:  5'- --cGCG-GCgGCgCUCuGGGCCCCGGGCc -3'
miRNA:   3'- auuCGCgCGaUG-GAG-CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 117295 0.67 0.752581
Target:  5'- cGAGCcCGC--CCUCGAGCCCagccccggcgCGGGCa -3'
miRNA:   3'- aUUCGcGCGauGGAGCUCGGG----------GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 88770 0.67 0.752581
Target:  5'- --cGCuGCGCU-CCUCG-GCCCUGGc- -3'
miRNA:   3'- auuCG-CGCGAuGGAGCuCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 78165 0.67 0.752581
Target:  5'- -cGGCGgGCcACCUgagGAGCCCgGGGCc -3'
miRNA:   3'- auUCGCgCGaUGGAg--CUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 133754 0.67 0.752581
Target:  5'- --cGCGCGCga--UCGAcGCCCCGuGCc -3'
miRNA:   3'- auuCGCGCGauggAGCU-CGGGGCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.