miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 137777 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 134713 0.68 0.703016
Target:  5'- -cGGCGCGCccagACCcggcCGGGaCCCGGACu -3'
miRNA:   3'- auUCGCGCGa---UGGa---GCUCgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 134110 0.71 0.477919
Target:  5'- --cGCGCGCUcgccgccgacuuccGCCUCGAcCCCCuGGGCu -3'
miRNA:   3'- auuCGCGCGA--------------UGGAGCUcGGGG-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 133754 0.67 0.752581
Target:  5'- --cGCGCGCga--UCGAcGCCCCGuGCc -3'
miRNA:   3'- auuCGCGCGauggAGCU-CGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 133362 0.66 0.799456
Target:  5'- --cGCGCagggcuucgGCUGCCUgCGcgcGGCCCaCGGGCg -3'
miRNA:   3'- auuCGCG---------CGAUGGA-GC---UCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 132717 0.68 0.672475
Target:  5'- -cGGCGCcCUACCUCauugcggcGGCCCCGcACu -3'
miRNA:   3'- auUCGCGcGAUGGAGc-------UCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 132447 0.68 0.651932
Target:  5'- aGAGCGCGUgccCCUCGGccGCCCUccGCg -3'
miRNA:   3'- aUUCGCGCGau-GGAGCU--CGGGGcuUG- -5'
23699 3' -57.7 NC_005261.1 + 131775 0.72 0.461893
Target:  5'- cGGGCGCGCcGCU--GGGCCCCGAc- -3'
miRNA:   3'- aUUCGCGCGaUGGagCUCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 130693 0.66 0.790352
Target:  5'- --cGCGUGCUG-CUCGAGCaCCUcgccgaGGACg -3'
miRNA:   3'- auuCGCGCGAUgGAGCUCG-GGG------CUUG- -5'
23699 3' -57.7 NC_005261.1 + 130659 0.67 0.752581
Target:  5'- --cGaCGCGCUGCUccucggCGAGCCCCu--- -3'
miRNA:   3'- auuC-GCGCGAUGGa-----GCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 130470 0.68 0.651932
Target:  5'- cGAGCG-GCUcgcggcguGCCUCGgcggcgagGGCCCCGAcgACg -3'
miRNA:   3'- aUUCGCgCGA--------UGGAGC--------UCGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 129373 0.71 0.51961
Target:  5'- cGGGuCGCGCgGCUUCGGGuCCaCCGGGCu -3'
miRNA:   3'- aUUC-GCGCGaUGGAGCUC-GG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 128712 0.66 0.799456
Target:  5'- gGAG-GCGC-GCC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCgCGCGaUGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 126935 0.68 0.692884
Target:  5'- -cAGCaGCGCgGCCagGGGCgCCGGGCg -3'
miRNA:   3'- auUCG-CGCGaUGGagCUCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 126465 0.66 0.781103
Target:  5'- -cAGCGCGCUcGCCUCGcGGUaguaCCGcGCc -3'
miRNA:   3'- auUCGCGCGA-UGGAGC-UCGg---GGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 124004 0.67 0.733012
Target:  5'- aGAGCGCGUaGCgCUCGuuuGCCguguagCCGGGCg -3'
miRNA:   3'- aUUCGCGCGaUG-GAGCu--CGG------GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 120666 0.69 0.600438
Target:  5'- cGGGCGCGCcugugAUCUCGcgcgcGCCCCGGc- -3'
miRNA:   3'- aUUCGCGCGa----UGGAGCu----CGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 120377 0.67 0.733012
Target:  5'- -cGGCGcCGCgcCCUCGcGCaCCGAGCa -3'
miRNA:   3'- auUCGC-GCGauGGAGCuCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 120327 0.71 0.500026
Target:  5'- gAGGCGCGCUGCgU----CCCCGAGCg -3'
miRNA:   3'- aUUCGCGCGAUGgAgcucGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 119960 0.66 0.799456
Target:  5'- ---cCGCGC-ACCcgccgucuccgUCGAGCCCCGGccgACg -3'
miRNA:   3'- auucGCGCGaUGG-----------AGCUCGGGGCU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.