miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 13708 0.68 0.603157
Target:  5'- cGGGCUGGGGgcggggguGGGGGUG-GGGGUGgGCu -3'
miRNA:   3'- -CUCGACCCU--------UCCUCGCgCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 33001 0.68 0.597047
Target:  5'- gGGGCcgaccgGGGAAGGGGggaggggggcgccgaUGCGGAGCGucCGCg -3'
miRNA:   3'- -CUCGa-----CCCUUCCUC---------------GCGCCUCGU--GUG- -5'
23699 5' -59.3 NC_005261.1 + 56114 0.68 0.592978
Target:  5'- cGAGCggcGGGAgcgcgccgcAGG-GCGgGGGGCGCGg -3'
miRNA:   3'- -CUCGa--CCCU---------UCCuCGCgCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 125730 0.68 0.592978
Target:  5'- cGGCUGGGGccgccgcaaGGGGGC-CGGGGC-CAg -3'
miRNA:   3'- cUCGACCCU---------UCCUCGcGCCUCGuGUg -5'
23699 5' -59.3 NC_005261.1 + 24129 0.68 0.592978
Target:  5'- gGGGgUGGGGgcuGGGuGgGCGGGGCuCACc -3'
miRNA:   3'- -CUCgACCCU---UCCuCgCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 7183 0.68 0.592978
Target:  5'- gGAGaaGGG-GGGAGgGgGGGGUGCGCg -3'
miRNA:   3'- -CUCgaCCCuUCCUCgCgCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 21682 0.68 0.582828
Target:  5'- cGGCUGGGGcucGAGCGCGucGCGgGCg -3'
miRNA:   3'- cUCGACCCUuc-CUCGCGCcuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 5567 0.68 0.582828
Target:  5'- cGAGCgGcGGAgauGGGGGCGCcGAGgGCGCc -3'
miRNA:   3'- -CUCGaC-CCU---UCCUCGCGcCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 991 0.68 0.582828
Target:  5'- aGAGCggaggagacgGGGgcGGGGgGCGGGGgGCGg -3'
miRNA:   3'- -CUCGa---------CCCuuCCUCgCGCCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 97093 0.68 0.572714
Target:  5'- cGGCUGGGccGGGGGCGCcagccGGGC-CGCg -3'
miRNA:   3'- cUCGACCCu-UCCUCGCGc----CUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 69517 0.68 0.572714
Target:  5'- cGGGCUGccGGAGcuGGCGCGGgcgcuGGCGCGCg -3'
miRNA:   3'- -CUCGAC--CCUUccUCGCGCC-----UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 17449 0.68 0.569687
Target:  5'- gGGGUUGGGGguAGGGGaaacugcgggcagaCGCGG-GCGCGCc -3'
miRNA:   3'- -CUCGACCCU--UCCUC--------------GCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 54184 0.68 0.562641
Target:  5'- ----aGGGGAGGAGCGCGcaccGGUGCGCc -3'
miRNA:   3'- cucgaCCCUUCCUCGCGCc---UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 24679 0.68 0.562641
Target:  5'- -uGCcGGGAcGGGGgGCGGGuGCAUGCa -3'
miRNA:   3'- cuCGaCCCUuCCUCgCGCCU-CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 9632 0.69 0.552617
Target:  5'- gGGGgUGGGGgcuGGGuGgGCGGGGCcCACu -3'
miRNA:   3'- -CUCgACCCU---UCCuCgCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 83862 0.69 0.549619
Target:  5'- uGGGCUGGGccgggccggacgccGGGucagcucuGAGCGCGGGGC-CGCc -3'
miRNA:   3'- -CUCGACCC--------------UUC--------CUCGCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 38265 0.69 0.542647
Target:  5'- cAGcCUGGGcuGGGGGCGgcUGGuGCACGCg -3'
miRNA:   3'- cUC-GACCCu-UCCUCGC--GCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 115549 0.69 0.542647
Target:  5'- cGGCUGGuGcAGGuccGUGUGGcAGCACACg -3'
miRNA:   3'- cUCGACC-CuUCCu--CGCGCC-UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 120940 0.69 0.541653
Target:  5'- cGGGCgcGGGAAGGuGgaggcucgcgcccCGCGGGGCGCGu -3'
miRNA:   3'- -CUCGa-CCCUUCCuC-------------GCGCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 88464 0.69 0.532737
Target:  5'- uGAGCgugUGGGcGGGccgugccGCGcCGGAGCGCGCc -3'
miRNA:   3'- -CUCG---ACCCuUCCu------CGC-GCCUCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.