miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 96845 0.66 0.684711
Target:  5'- aGGCcGGGGucgacgGGGGGCuCGGGGgGCGCg -3'
miRNA:   3'- cUCGaCCCU------UCCUCGcGCCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 43409 0.67 0.674579
Target:  5'- aGGCgccgGGGgcGGccuccgccgccGGCGgGGAGCugGCu -3'
miRNA:   3'- cUCGa---CCCuuCC-----------UCGCgCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 45361 0.67 0.674579
Target:  5'- aGGGCUGcagcGAGGAGCGCgucGGGGC-CGCc -3'
miRNA:   3'- -CUCGACcc--UUCCUCGCG---CCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 92726 0.67 0.664413
Target:  5'- gGAGC-GGGAGcGGGGCGgGGAcaGCgaGCGCc -3'
miRNA:   3'- -CUCGaCCCUU-CCUCGCgCCU--CG--UGUG- -5'
23699 5' -59.3 NC_005261.1 + 118346 0.67 0.661358
Target:  5'- cGGGCUGcuccucggccucucGGccGG-GCGCuGGGGCGCGCg -3'
miRNA:   3'- -CUCGAC--------------CCuuCCuCGCG-CCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 129510 0.67 0.644011
Target:  5'- gGGGaaGGGAAGGAaaaggaacgagGCGCGcGGGCuACGCc -3'
miRNA:   3'- -CUCgaCCCUUCCU-----------CGCGC-CUCG-UGUG- -5'
23699 5' -59.3 NC_005261.1 + 97991 0.67 0.644011
Target:  5'- aGAGUgaagUGGGAGGcGGCGgGGGcGCugGCg -3'
miRNA:   3'- -CUCG----ACCCUUCcUCGCgCCU-CGugUG- -5'
23699 5' -59.3 NC_005261.1 + 81278 0.67 0.644011
Target:  5'- -cGcCUGcGcGAGccGGAGCGCGGcGCGCACg -3'
miRNA:   3'- cuC-GAC-C-CUU--CCUCGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 69944 0.67 0.644011
Target:  5'- gGAGCcgGGGAuagcggAGGGGCcucCGG-GCGCGCg -3'
miRNA:   3'- -CUCGa-CCCU------UCCUCGc--GCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 115152 0.67 0.633792
Target:  5'- cGAGCcgGGGGucGGGcgccuccuGCGCGauGGGCACGCg -3'
miRNA:   3'- -CUCGa-CCCU--UCCu-------CGCGC--CUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 50592 0.67 0.623571
Target:  5'- cGAGCgGGGAGGGcAGgGagaCGGGGCGCc- -3'
miRNA:   3'- -CUCGaCCCUUCC-UCgC---GCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 108904 0.67 0.623571
Target:  5'- -cGCcGGcGAGcGGGGCGCGGGGUcggggcccaGCACg -3'
miRNA:   3'- cuCGaCC-CUU-CCUCGCGCCUCG---------UGUG- -5'
23699 5' -59.3 NC_005261.1 + 105293 0.68 0.613357
Target:  5'- cGAGCccGGGcgcGcGAGCGCGGGGUccucGCACu -3'
miRNA:   3'- -CUCGa-CCCuu-C-CUCGCGCCUCG----UGUG- -5'
23699 5' -59.3 NC_005261.1 + 137349 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137307 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137265 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137223 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137181 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137139 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 13708 0.68 0.603157
Target:  5'- cGGGCUGGGGgcggggguGGGGGUG-GGGGUGgGCu -3'
miRNA:   3'- -CUCGACCCU--------UCCUCGCgCCUCGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.