miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 21618 0.66 0.73454
Target:  5'- cGAGCUucGGGcGAGGguccccgccccGGCGCGGAcGC-CGCu -3'
miRNA:   3'- -CUCGA--CCC-UUCC-----------UCGCGCCU-CGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 21682 0.68 0.582828
Target:  5'- cGGCUGGGGcucGAGCGCGucGCGgGCg -3'
miRNA:   3'- cUCGACCCUuc-CUCGCGCcuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 22094 0.66 0.704836
Target:  5'- -cGCgUGGGGgcGGGAGgGCGGuGUGCGg -3'
miRNA:   3'- cuCG-ACCCU--UCCUCgCGCCuCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 22567 0.72 0.352915
Target:  5'- cGGGgaGGGGAGGGGgagaGCGGcggaggcGGCGCACg -3'
miRNA:   3'- -CUCgaCCCUUCCUCg---CGCC-------UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 24013 0.77 0.172758
Target:  5'- -uGCUaGGGGAGGGG-GCGGAGCGCGg -3'
miRNA:   3'- cuCGA-CCCUUCCUCgCGCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 24129 0.68 0.592978
Target:  5'- gGGGgUGGGGgcuGGGuGgGCGGGGCuCACc -3'
miRNA:   3'- -CUCgACCCU---UCCuCgCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 24679 0.68 0.562641
Target:  5'- -uGCcGGGAcGGGGgGCGGGuGCAUGCa -3'
miRNA:   3'- cuCGaCCCUuCCUCgCGCCU-CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 26315 0.7 0.493804
Target:  5'- aGAGgUGGGAAGGgagauAGUGagaGGGGCGCGg -3'
miRNA:   3'- -CUCgACCCUUCC-----UCGCg--CCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 26885 0.77 0.177167
Target:  5'- uGGgUGGGggGGGGCG-GGGGCGCAg -3'
miRNA:   3'- cUCgACCCuuCCUCGCgCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 27169 0.66 0.714811
Target:  5'- gGGGCgguaagugGGGAAGGAaaGgGGAGCAaACg -3'
miRNA:   3'- -CUCGa-------CCCUUCCUcgCgCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 30815 0.7 0.484271
Target:  5'- gGAGCUGGGggGGcccGGgGaCGGGGC-CGa -3'
miRNA:   3'- -CUCGACCCuuCC---UCgC-GCCUCGuGUg -5'
23699 5' -59.3 NC_005261.1 + 32081 0.7 0.484271
Target:  5'- -cGCUGGGGcucgGGGAGCcggacuucGCGGAGgGCGa -3'
miRNA:   3'- cuCGACCCU----UCCUCG--------CGCCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 32902 0.71 0.420238
Target:  5'- cGGgaGGGAAGGGGCGCgcguGGGGgGCGg -3'
miRNA:   3'- cUCgaCCCUUCCUCGCG----CCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 32932 0.73 0.330739
Target:  5'- cGGGCgGGGggGGGGCGgGGAGgGgAg -3'
miRNA:   3'- -CUCGaCCCuuCCUCGCgCCUCgUgUg -5'
23699 5' -59.3 NC_005261.1 + 33001 0.68 0.597047
Target:  5'- gGGGCcgaccgGGGAAGGGGggaggggggcgccgaUGCGGAGCGucCGCg -3'
miRNA:   3'- -CUCGa-----CCCUUCCUC---------------GCGCCUCGU--GUG- -5'
23699 5' -59.3 NC_005261.1 + 38265 0.69 0.542647
Target:  5'- cAGcCUGGGcuGGGGGCGgcUGGuGCACGCg -3'
miRNA:   3'- cUC-GACCCu-UCCUCGC--GCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 41909 0.7 0.484271
Target:  5'- gGGGUUGGGAuaaggcaggugAGGAcauucuCGCuGGAGCGCACg -3'
miRNA:   3'- -CUCGACCCU-----------UCCUc-----GCG-CCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 43409 0.67 0.674579
Target:  5'- aGGCgccgGGGgcGGccuccgccgccGGCGgGGAGCugGCu -3'
miRNA:   3'- cUCGa---CCCuuCC-----------UCGCgCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 43793 0.75 0.244093
Target:  5'- aGGGCgccgcgGGuGAGGGGGCGCcGGGCGCGCc -3'
miRNA:   3'- -CUCGa-----CC-CUUCCUCGCGcCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 44207 0.66 0.703835
Target:  5'- cGAGCUGcaggcGGcccGGGAGCGCGcGcugcuggccgcccAGCGCGCg -3'
miRNA:   3'- -CUCGAC-----CCu--UCCUCGCGC-C-------------UCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.