miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 78 0.81 0.092769
Target:  5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3'
miRNA:   3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 156 0.73 0.345921
Target:  5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3'
miRNA:   3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 512 0.73 0.316052
Target:  5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3'
miRNA:   3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 991 0.68 0.582828
Target:  5'- aGAGCggaggagacgGGGgcGGGGgGCGGGGgGCGg -3'
miRNA:   3'- -CUCGa---------CCCuuCCUCgCGCCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 1191 0.68 0.603157
Target:  5'- gGGGCcGGGGccGGGCGCGGcGCGgACc -3'
miRNA:   3'- -CUCGaCCCUucCUCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 5388 0.73 0.316052
Target:  5'- aGGgaGGGAGGGAGaGCGaGAGCGCGg -3'
miRNA:   3'- cUCgaCCCUUCCUCgCGC-CUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 5567 0.68 0.582828
Target:  5'- cGAGCgGcGGAgauGGGGGCGCcGAGgGCGCc -3'
miRNA:   3'- -CUCGaC-CCU---UCCUCGCGcCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 7183 0.68 0.592978
Target:  5'- gGAGaaGGG-GGGAGgGgGGGGUGCGCg -3'
miRNA:   3'- -CUCgaCCCuUCCUCgCgCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 9126 0.66 0.73454
Target:  5'- -cGCcGGGAcuGGGGGCG-GGuGCAgGCa -3'
miRNA:   3'- cuCGaCCCU--UCCUCGCgCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 9254 1.08 0.001311
Target:  5'- gGAGCUGGGAAGGAGCGCGGAGCACACc -3'
miRNA:   3'- -CUCGACCCUUCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 9632 0.69 0.552617
Target:  5'- gGGGgUGGGGgcuGGGuGgGCGGGGCcCACu -3'
miRNA:   3'- -CUCgACCCU---UCCuCgCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 11383 0.73 0.345921
Target:  5'- -uGgaGGGAGGGAGUGUGG-GCGgGCg -3'
miRNA:   3'- cuCgaCCCUUCCUCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 11432 0.66 0.6948
Target:  5'- cGGGCgGGGggGGcggcggaagagGGaaaaagaaGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCC-----------UCg-------CGCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 11791 0.71 0.411513
Target:  5'- gGGGCggagggGGGAAGGGGgGCGGAGgGgGa -3'
miRNA:   3'- -CUCGa-----CCCUUCCUCgCGCCUCgUgUg -5'
23699 5' -59.3 NC_005261.1 + 11826 0.71 0.438019
Target:  5'- aGAGUggGGGcGGGGGCcccGCGG-GCGCGCg -3'
miRNA:   3'- -CUCGa-CCCuUCCUCG---CGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 13667 0.84 0.060509
Target:  5'- -cGCcGcGGggGGGGCGCGGGGCGCGCg -3'
miRNA:   3'- cuCGaC-CCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 13708 0.68 0.603157
Target:  5'- cGGGCUGGGGgcggggguGGGGGUG-GGGGUGgGCu -3'
miRNA:   3'- -CUCGACCCU--------UCCUCGCgCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 15969 0.66 0.698821
Target:  5'- cGGGCgGGGGAGG-GCcCGGgccgcucacccgggcAGCGCGCu -3'
miRNA:   3'- -CUCGaCCCUUCCuCGcGCC---------------UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 17449 0.68 0.569687
Target:  5'- gGGGUUGGGGguAGGGGaaacugcgggcagaCGCGG-GCGCGCc -3'
miRNA:   3'- -CUCGACCCU--UCCUC--------------GCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 17722 0.66 0.73454
Target:  5'- -uGCccGGGAAucGGAGCGgcgcuCGGAGCGgGCg -3'
miRNA:   3'- cuCGa-CCCUU--CCUCGC-----GCCUCGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.