miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 138183 0.73 0.316052
Target:  5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3'
miRNA:   3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 137839 0.73 0.345921
Target:  5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3'
miRNA:   3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 137761 0.81 0.092769
Target:  5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3'
miRNA:   3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 137391 0.74 0.281509
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaGGAGCgaaaGCACg -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg----CCUCG----UGUG- -5'
23699 5' -59.3 NC_005261.1 + 137349 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137307 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137265 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137223 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137181 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 137139 0.68 0.613357
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5'
23699 5' -59.3 NC_005261.1 + 136555 0.7 0.456224
Target:  5'- cAGCUGGuGggGGcagaaGGCGCGGgugGGCGgGCg -3'
miRNA:   3'- cUCGACC-CuuCC-----UCGCGCC---UCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 134180 0.71 0.420238
Target:  5'- -cGCUGcuugcGGAGGGccuGGCGCGGcucGGCGCGCg -3'
miRNA:   3'- cuCGAC-----CCUUCC---UCGCGCC---UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 132519 0.71 0.411513
Target:  5'- cGGGCUGGGAcgAGuacGAGCGCGcccucGCGCGCg -3'
miRNA:   3'- -CUCGACCCU--UC---CUCGCGCcu---CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 129510 0.67 0.644011
Target:  5'- gGGGaaGGGAAGGAaaaggaacgagGCGCGcGGGCuACGCc -3'
miRNA:   3'- -CUCgaCCCUUCCU-----------CGCGC-CUCG-UGUG- -5'
23699 5' -59.3 NC_005261.1 + 127334 0.7 0.44707
Target:  5'- -cGCggGGGccGGAGCgGCGGGGCGCu- -3'
miRNA:   3'- cuCGa-CCCuuCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 125730 0.68 0.592978
Target:  5'- cGGCUGGGGccgccgcaaGGGGGC-CGGGGC-CAg -3'
miRNA:   3'- cUCGACCCU---------UCCUCGcGCCUCGuGUg -5'
23699 5' -59.3 NC_005261.1 + 121796 0.78 0.164234
Target:  5'- cGGGCUGGGcAGGGGGCGCGuGGCugGg -3'
miRNA:   3'- -CUCGACCC-UUCCUCGCGCcUCGugUg -5'
23699 5' -59.3 NC_005261.1 + 120940 0.69 0.541653
Target:  5'- cGGGCgcGGGAAGGuGgaggcucgcgcccCGCGGGGCGCGu -3'
miRNA:   3'- -CUCGa-CCCUUCCuC-------------GCGCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 120428 0.66 0.73454
Target:  5'- uGGGCUGGuGAAcauGCGCGGcGUGCGCc -3'
miRNA:   3'- -CUCGACC-CUUccuCGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 119280 0.69 0.503421
Target:  5'- -cGCUGGGcGGGGGCucgccgaggaaGCGGAGgGCGa -3'
miRNA:   3'- cuCGACCCuUCCUCG-----------CGCCUCgUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.