Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 73206 | 0.66 | 0.73454 |
Target: 5'- uGGCcccGGGcgccucGAGGGGCGCGGuGGC-CGCg -3' miRNA: 3'- cUCGa--CCC------UUCCUCGCGCC-UCGuGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 58875 | 0.73 | 0.308895 |
Target: 5'- -cGCUGGGGAGGuccGgGCGGgccucgcaGGCGCGCg -3' miRNA: 3'- cuCGACCCUUCCu--CgCGCC--------UCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 512 | 0.73 | 0.316052 |
Target: 5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3' miRNA: 3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 5388 | 0.73 | 0.316052 |
Target: 5'- aGGgaGGGAGGGAGaGCGaGAGCGCGg -3' miRNA: 3'- cUCgaCCCUUCCUCgCGC-CUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 138183 | 0.73 | 0.316052 |
Target: 5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3' miRNA: 3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 57191 | 0.73 | 0.323333 |
Target: 5'- cGGC-GGGAAgGGGGgGgGGGGCGCGCg -3' miRNA: 3'- cUCGaCCCUU-CCUCgCgCCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 32932 | 0.73 | 0.330739 |
Target: 5'- cGGGCgGGGggGGGGCGgGGAGgGgAg -3' miRNA: 3'- -CUCGaCCCuuCCUCGCgCCUCgUgUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 98707 | 0.73 | 0.338268 |
Target: 5'- gGAGCUGGGGccGGGGUccgGCcuugGGGGCACGCg -3' miRNA: 3'- -CUCGACCCUu-CCUCG---CG----CCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 156 | 0.73 | 0.345921 |
Target: 5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3' miRNA: 3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 80066 | 0.74 | 0.301863 |
Target: 5'- cGGGCgcggGGGGcguGGGGGaCGCGGAccgGCGCGCg -3' miRNA: 3'- -CUCGa---CCCU---UCCUC-GCGCCU---CGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137391 | 0.74 | 0.281509 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaGGAGCgaaaGCACg -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg----CCUCG----UGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 43793 | 0.75 | 0.244093 |
Target: 5'- aGGGCgccgcgGGuGAGGGGGCGCcGGGCGCGCc -3' miRNA: 3'- -CUCGa-----CC-CUUCCUCGCGcCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 13667 | 0.84 | 0.060509 |
Target: 5'- -cGCcGcGGggGGGGCGCGGGGCGCGCg -3' miRNA: 3'- cuCGaC-CCuuCCUCGCGCCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 78 | 0.81 | 0.092769 |
Target: 5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3' miRNA: 3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137761 | 0.81 | 0.092769 |
Target: 5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3' miRNA: 3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 121796 | 0.78 | 0.164234 |
Target: 5'- cGGGCUGGGcAGGGGGCGCGuGGCugGg -3' miRNA: 3'- -CUCGACCC-UUCCUCGCGCcUCGugUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 24013 | 0.77 | 0.172758 |
Target: 5'- -uGCUaGGGGAGGGG-GCGGAGCGCGg -3' miRNA: 3'- cuCGA-CCCUUCCUCgCGCCUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 26885 | 0.77 | 0.177167 |
Target: 5'- uGGgUGGGggGGGGCG-GGGGCGCAg -3' miRNA: 3'- cUCgACCCuuCCUCGCgCCUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 71958 | 0.76 | 0.221513 |
Target: 5'- uGGCgucGGcgcGGGGCGCGGAGCGCGCg -3' miRNA: 3'- cUCGac-CCuu-CCUCGCGCCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 51356 | 0.76 | 0.221513 |
Target: 5'- -cGCUGGGcuGuccGGCGCGGAGUACGCg -3' miRNA: 3'- cuCGACCCuuCc--UCGCGCCUCGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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