miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 9254 1.08 0.001311
Target:  5'- gGAGCUGGGAAGGAGCGCGGAGCACACc -3'
miRNA:   3'- -CUCGACCCUUCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 13667 0.84 0.060509
Target:  5'- -cGCcGcGGggGGGGCGCGGGGCGCGCg -3'
miRNA:   3'- cuCGaC-CCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 78 0.81 0.092769
Target:  5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3'
miRNA:   3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 137761 0.81 0.092769
Target:  5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3'
miRNA:   3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 121796 0.78 0.164234
Target:  5'- cGGGCUGGGcAGGGGGCGCGuGGCugGg -3'
miRNA:   3'- -CUCGACCC-UUCCUCGCGCcUCGugUg -5'
23699 5' -59.3 NC_005261.1 + 24013 0.77 0.172758
Target:  5'- -uGCUaGGGGAGGGG-GCGGAGCGCGg -3'
miRNA:   3'- cuCGA-CCCUUCCUCgCGCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 26885 0.77 0.177167
Target:  5'- uGGgUGGGggGGGGCG-GGGGCGCAg -3'
miRNA:   3'- cUCgACCCuuCCUCGCgCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 71958 0.76 0.221513
Target:  5'- uGGCgucGGcgcGGGGCGCGGAGCGCGCg -3'
miRNA:   3'- cUCGac-CCuu-CCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 51356 0.76 0.221513
Target:  5'- -cGCUGGGcuGuccGGCGCGGAGUACGCg -3'
miRNA:   3'- cuCGACCCuuCc--UCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 43793 0.75 0.244093
Target:  5'- aGGGCgccgcgGGuGAGGGGGCGCcGGGCGCGCc -3'
miRNA:   3'- -CUCGa-----CC-CUUCCUCGCGcCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 137391 0.74 0.281509
Target:  5'- gGAGCgagGGaGGAGGAGCGagggaGGAGCgaaaGCACg -3'
miRNA:   3'- -CUCGa--CC-CUUCCUCGCg----CCUCG----UGUG- -5'
23699 5' -59.3 NC_005261.1 + 80066 0.74 0.301863
Target:  5'- cGGGCgcggGGGGcguGGGGGaCGCGGAccgGCGCGCg -3'
miRNA:   3'- -CUCGa---CCCU---UCCUC-GCGCCU---CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 58875 0.73 0.308895
Target:  5'- -cGCUGGGGAGGuccGgGCGGgccucgcaGGCGCGCg -3'
miRNA:   3'- cuCGACCCUUCCu--CgCGCC--------UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 512 0.73 0.316052
Target:  5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3'
miRNA:   3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 5388 0.73 0.316052
Target:  5'- aGGgaGGGAGGGAGaGCGaGAGCGCGg -3'
miRNA:   3'- cUCgaCCCUUCCUCgCGC-CUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 138183 0.73 0.316052
Target:  5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3'
miRNA:   3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 57191 0.73 0.323333
Target:  5'- cGGC-GGGAAgGGGGgGgGGGGCGCGCg -3'
miRNA:   3'- cUCGaCCCUU-CCUCgCgCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 32932 0.73 0.330739
Target:  5'- cGGGCgGGGggGGGGCGgGGAGgGgAg -3'
miRNA:   3'- -CUCGaCCCuuCCUCGCgCCUCgUgUg -5'
23699 5' -59.3 NC_005261.1 + 98707 0.73 0.338268
Target:  5'- gGAGCUGGGGccGGGGUccgGCcuugGGGGCACGCg -3'
miRNA:   3'- -CUCGACCCUu-CCUCG---CG----CCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 11383 0.73 0.345921
Target:  5'- -uGgaGGGAGGGAGUGUGG-GCGgGCg -3'
miRNA:   3'- cuCgaCCCUUCCUCGCGCCuCGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.