miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 137839 0.73 0.345921
Target:  5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3'
miRNA:   3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 11383 0.73 0.345921
Target:  5'- -uGgaGGGAGGGAGUGUGG-GCGgGCg -3'
miRNA:   3'- cuCgaCCCUUCCUCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 156 0.73 0.345921
Target:  5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3'
miRNA:   3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 22567 0.72 0.352915
Target:  5'- cGGGgaGGGGAGGGGgagaGCGGcggaggcGGCGCACg -3'
miRNA:   3'- -CUCgaCCCUUCCUCg---CGCC-------UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 75835 0.72 0.386023
Target:  5'- -cGCgcccGGGGAGGGGCGCGcGGCGC-Cg -3'
miRNA:   3'- cuCGa---CCCUUCCUCGCGCcUCGUGuG- -5'
23699 5' -59.3 NC_005261.1 + 44750 0.71 0.4029
Target:  5'- cGAGCUgcgcgcgacccGGGAGcGGAGCG-GGAGC-CGCa -3'
miRNA:   3'- -CUCGA-----------CCCUU-CCUCGCgCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 90197 0.71 0.4029
Target:  5'- -cGCaGGGAgcgcGGGGGCgGCGGAGCGCc- -3'
miRNA:   3'- cuCGaCCCU----UCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 11791 0.71 0.411513
Target:  5'- gGGGCggagggGGGAAGGGGgGCGGAGgGgGa -3'
miRNA:   3'- -CUCGa-----CCCUUCCUCgCGCCUCgUgUg -5'
23699 5' -59.3 NC_005261.1 + 132519 0.71 0.411513
Target:  5'- cGGGCUGGGAcgAGuacGAGCGCGcccucGCGCGCg -3'
miRNA:   3'- -CUCGACCCU--UC---CUCGCGCcu---CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 92696 0.71 0.420238
Target:  5'- cGAGC-GGGAgcGGGAGCG-GGAGCGggaGCg -3'
miRNA:   3'- -CUCGaCCCU--UCCUCGCgCCUCGUg--UG- -5'
23699 5' -59.3 NC_005261.1 + 134180 0.71 0.420238
Target:  5'- -cGCUGcuugcGGAGGGccuGGCGCGGcucGGCGCGCg -3'
miRNA:   3'- cuCGAC-----CCUUCC---UCGCGCC---UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 32902 0.71 0.420238
Target:  5'- cGGgaGGGAAGGGGCGCgcguGGGGgGCGg -3'
miRNA:   3'- cUCgaCCCUUCCUCGCG----CCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 75576 0.71 0.429074
Target:  5'- -cGCUGGGcGGcGGCGCGGcgcucGCGCGCg -3'
miRNA:   3'- cuCGACCCuUCcUCGCGCCu----CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 97595 0.71 0.429074
Target:  5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 97622 0.71 0.429074
Target:  5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 11826 0.71 0.438019
Target:  5'- aGAGUggGGGcGGGGGCcccGCGG-GCGCGCg -3'
miRNA:   3'- -CUCGa-CCCuUCCUCG---CGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 127334 0.7 0.44707
Target:  5'- -cGCggGGGccGGAGCgGCGGGGCGCu- -3'
miRNA:   3'- cuCGa-CCCuuCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 118671 0.7 0.44707
Target:  5'- gGGGCUGaGGgcGGcgGGCGCuGGcGCACGCg -3'
miRNA:   3'- -CUCGAC-CCuuCC--UCGCG-CCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 136555 0.7 0.456224
Target:  5'- cAGCUGGuGggGGcagaaGGCGCGGgugGGCGgGCg -3'
miRNA:   3'- cUCGACC-CuuCC-----UCGCGCC---UCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 81349 0.7 0.456224
Target:  5'- cGGCgGGGcGGGGGCuuGCGGGGgGCGCc -3'
miRNA:   3'- cUCGaCCCuUCCUCG--CGCCUCgUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.