Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 4687 | 1.08 | 0.000151 |
Target: 5'- gUCAGCCGGACGCGGGCGCUGCAGCCGu -3' miRNA: 3'- -AGUCGGCCUGCGCCCGCGACGUCGGC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 3855 | 0.77 | 0.043563 |
Target: 5'- cCAGCCGGAC-C-GGCGCUGCGGCg- -3' miRNA: 3'- aGUCGGCCUGcGcCCGCGACGUCGgc -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 5870 | 0.72 | 0.10243 |
Target: 5'- aUCcGCCGGGCGCGGuuGCgGUaugAGCCGg -3' miRNA: 3'- -AGuCGGCCUGCGCCcgCGaCG---UCGGC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 16804 | 0.71 | 0.117212 |
Target: 5'- cCAGCCGGGgGCaGGCacaccgcgccggGCUGUGGCUGa -3' miRNA: 3'- aGUCGGCCUgCGcCCG------------CGACGUCGGC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 32609 | 0.7 | 0.13757 |
Target: 5'- aUCGuuCCGGugGUGGGCGUUGaUGGCUGg -3' miRNA: 3'- -AGUc-GGCCugCGCCCGCGAC-GUCGGC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 14627 | 0.7 | 0.141264 |
Target: 5'- aCAGCCGGGCGau-GUGCUGCuguGCUGu -3' miRNA: 3'- aGUCGGCCUGCgccCGCGACGu--CGGC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 5438 | 0.69 | 0.165392 |
Target: 5'- gCAGCCGGACGUGaacGCGCagaucaccGCAGCgGu -3' miRNA: 3'- aGUCGGCCUGCGCc--CGCGa-------CGUCGgC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 4335 | 0.69 | 0.156143 |
Target: 5'- gCAGCCGGucuuaaaccgccCGCcuGGGCgGCUGCAGCa- -3' miRNA: 3'- aGUCGGCCu-----------GCG--CCCG-CGACGUCGgc -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 16883 | 0.69 | 0.152897 |
Target: 5'- aCAGCCcGGCGCGGuGUGCcUGCccccGGCUGg -3' miRNA: 3'- aGUCGGcCUGCGCC-CGCG-ACG----UCGGC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 7571 | 0.67 | 0.218783 |
Target: 5'- gCGGCCuGGccagaaugcaauaACGgGaGGCGCUGUGGCUGa -3' miRNA: 3'- aGUCGG-CC-------------UGCgC-CCGCGACGUCGGC- -5' |
|||||||
2370 | 3' | -64.1 | NC_001416.1 | + | 16953 | 0.67 | 0.230629 |
Target: 5'- aUCAGCacCGGugGCGuGUGCUGgcggugaaCAGCCa -3' miRNA: 3'- -AGUCG--GCCugCGCcCGCGAC--------GUCGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home