miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23701 3' -46.2 NC_005261.1 + 100210 0.66 0.999923
Target:  5'- gGCCAGCagcccCGCGUAGAGCUCGGc-- -3'
miRNA:   3'- -CGGUCGcaa--GCGUGUUUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 40263 0.72 0.977633
Target:  5'- uGgCGGCGgcCGCgGCGGGGCUCAGUAGa -3'
miRNA:   3'- -CgGUCGCaaGCG-UGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 36963 0.71 0.984452
Target:  5'- cGCCGcGCG---GCGCAGAGCUCGGUGc -3'
miRNA:   3'- -CGGU-CGCaagCGUGUUUUGAGUUAUu -5'
23701 3' -46.2 NC_005261.1 + 69056 0.71 0.984452
Target:  5'- uGCCAGCGcUUCGCGCuauGC-CAGUu- -3'
miRNA:   3'- -CGGUCGC-AAGCGUGuuuUGaGUUAuu -5'
23701 3' -46.2 NC_005261.1 + 100274 0.71 0.989562
Target:  5'- cGCCGGUGg-CGCACGAAGCggCAGa-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGa-GUUauu -5'
23701 3' -46.2 NC_005261.1 + 5137 0.71 0.989562
Target:  5'- cGCCGGCGcUCGCGCGc--CUCGGc-- -3'
miRNA:   3'- -CGGUCGCaAGCGUGUuuuGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 39004 0.7 0.990936
Target:  5'- uGCCAGCGcgcccaCGCGCAGAGCguccgCGAg-- -3'
miRNA:   3'- -CGGUCGCaa----GCGUGUUUUGa----GUUauu -5'
23701 3' -46.2 NC_005261.1 + 122323 0.7 0.992163
Target:  5'- gGCCGGCGgucagguggCGCucGCAGAGCUCGc--- -3'
miRNA:   3'- -CGGUCGCaa-------GCG--UGUUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 105137 0.7 0.994221
Target:  5'- cGCCGGCG--CGCGCAGguccucgcGGCUCGAg-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUU--------UUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 76472 0.72 0.973201
Target:  5'- cGCCGGCGcgCGCGCGGAccccgagcccucggcGCUCGc--- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUU---------------UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 72236 0.73 0.968829
Target:  5'- gGCCGGCGgugCGCGCAAAG-UCGAc-- -3'
miRNA:   3'- -CGGUCGCaa-GCGUGUUUUgAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 61230 0.73 0.96541
Target:  5'- cGCuCGGCGUUCGgCGCG-AGCUCGAc-- -3'
miRNA:   3'- -CG-GUCGCAAGC-GUGUuUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 8710 1.1 0.018775
Target:  5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 24762 1.06 0.032265
Target:  5'- uGCCAGUGUUCGCACAGAGCUCAAUAAg -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 8898 1.05 0.035298
Target:  5'- uGCCAGUGUUCGCACAAAGCUCAAUAAu -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 24963 0.75 0.903099
Target:  5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3'
miRNA:   3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 25077 0.75 0.903099
Target:  5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3'
miRNA:   3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 112174 0.74 0.934
Target:  5'- cGCCGGCcg-CGCGCGGGGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaaGCGUGUUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 39993 0.74 0.949117
Target:  5'- cGCCGGCGUgCGUgaaggcguacgaGCAGAACUCGGg-- -3'
miRNA:   3'- -CGGUCGCAaGCG------------UGUUUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 68156 0.73 0.961736
Target:  5'- gGCCGGCuacacgCGCGCGGAGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaa---GCGUGUUUUGAGUuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.