miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23701 3' -46.2 NC_005261.1 + 1897 0.68 0.998606
Target:  5'- cGCCAGCG--CGCGCc--GCUCAGg-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 3800 0.69 0.997525
Target:  5'- cGCCAGC--UCGCGCAGccGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaAGCGUGUUu-UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 3871 0.69 0.997944
Target:  5'- gGCCGGCGagcacggCGCGCA--GCUCGGc-- -3'
miRNA:   3'- -CGGUCGCaa-----GCGUGUuuUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 5137 0.71 0.989562
Target:  5'- cGCCGGCGcUCGCGCGc--CUCGGc-- -3'
miRNA:   3'- -CGGUCGCaAGCGUGUuuuGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 8594 1.1 0.018775
Target:  5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 8710 1.1 0.018775
Target:  5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 8898 1.05 0.035298
Target:  5'- uGCCAGUGUUCGCACAAAGCUCAAUAAu -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 12321 0.67 0.999528
Target:  5'- aGCCGGCGggCGCGC---GCUUGGc-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 14940 0.66 0.999825
Target:  5'- cGCCAGCuggCGCugGAAGCgagCGGg-- -3'
miRNA:   3'- -CGGUCGcaaGCGugUUUUGa--GUUauu -5'
23701 3' -46.2 NC_005261.1 + 15232 0.66 0.999825
Target:  5'- aGCCGGCGUugaggccccgcUCGCAguGGGCcgCGAUc- -3'
miRNA:   3'- -CGGUCGCA-----------AGCGUguUUUGa-GUUAuu -5'
23701 3' -46.2 NC_005261.1 + 17006 0.66 0.999866
Target:  5'- cGCCAGCaugUCGCACGcggccgcGCUCGu--- -3'
miRNA:   3'- -CGGUCGca-AGCGUGUuu-----UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 19279 0.69 0.997944
Target:  5'- cGCCAGCGUcUCGUACGcGACg------ -3'
miRNA:   3'- -CGGUCGCA-AGCGUGUuUUGaguuauu -5'
23701 3' -46.2 NC_005261.1 + 19377 0.67 0.999406
Target:  5'- uGCCAGCcaggcCGUaguaGCGGGGCUCGGUGAu -3'
miRNA:   3'- -CGGUCGcaa--GCG----UGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 22828 0.67 0.999708
Target:  5'- cGCCGcCGUUgGCGCcGGGCUCGGg-- -3'
miRNA:   3'- -CGGUcGCAAgCGUGuUUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 24762 1.06 0.032265
Target:  5'- uGCCAGUGUUCGCACAGAGCUCAAUAAg -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 24963 0.75 0.903099
Target:  5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3'
miRNA:   3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 25077 0.75 0.903099
Target:  5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3'
miRNA:   3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 28592 0.67 0.999708
Target:  5'- cGCCGGCGggccgccCGCGCcGAGCUgGcgGAg -3'
miRNA:   3'- -CGGUCGCaa-----GCGUGuUUUGAgUuaUU- -5'
23701 3' -46.2 NC_005261.1 + 36963 0.71 0.984452
Target:  5'- cGCCGcGCG---GCGCAGAGCUCGGUGc -3'
miRNA:   3'- -CGGU-CGCaagCGUGUUUUGAGUUAUu -5'
23701 3' -46.2 NC_005261.1 + 39004 0.7 0.990936
Target:  5'- uGCCAGCGcgcccaCGCGCAGAGCguccgCGAg-- -3'
miRNA:   3'- -CGGUCGCaa----GCGUGUUUUGa----GUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.