miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23701 3' -46.2 NC_005261.1 + 122323 0.7 0.992163
Target:  5'- gGCCGGCGgucagguggCGCucGCAGAGCUCGc--- -3'
miRNA:   3'- -CGGUCGCaa-------GCG--UGUUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 119653 0.67 0.999627
Target:  5'- aCCGGCGgcgCGCGCcuGGAGCUCu---- -3'
miRNA:   3'- cGGUCGCaa-GCGUG--UUUUGAGuuauu -5'
23701 3' -46.2 NC_005261.1 + 115926 0.66 0.999773
Target:  5'- cGCC-GCGUccgCGCGCGGGGCagGGUAc -3'
miRNA:   3'- -CGGuCGCAa--GCGUGUUUUGagUUAUu -5'
23701 3' -46.2 NC_005261.1 + 113243 0.69 0.996471
Target:  5'- cGCgCAGCaaGUUCGCGCGcGGGCUCAu--- -3'
miRNA:   3'- -CG-GUCG--CAAGCGUGU-UUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 112174 0.74 0.934
Target:  5'- cGCCGGCcg-CGCGCGGGGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaaGCGUGUUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 108515 0.66 0.999866
Target:  5'- gGCCAcGCcg-CGCACGAAGggguCUCGGUAGg -3'
miRNA:   3'- -CGGU-CGcaaGCGUGUUUU----GAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 107617 0.69 0.997525
Target:  5'- gGCaCAGCGUccgUGCGCGgGAACUCGAg-- -3'
miRNA:   3'- -CG-GUCGCAa--GCGUGU-UUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 106935 0.66 0.999773
Target:  5'- cGCCAGCGacaCGCGCAc--CUCGGc-- -3'
miRNA:   3'- -CGGUCGCaa-GCGUGUuuuGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 105137 0.7 0.994221
Target:  5'- cGCCGGCG--CGCGCAGguccucgcGGCUCGAg-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUU--------UUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 103824 0.66 0.999773
Target:  5'- cGCCAGCaGcUCGCGgaGGAGCUCGc--- -3'
miRNA:   3'- -CGGUCG-CaAGCGUg-UUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 100274 0.71 0.989562
Target:  5'- cGCCGGUGg-CGCACGAAGCggCAGa-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGa-GUUauu -5'
23701 3' -46.2 NC_005261.1 + 100210 0.66 0.999923
Target:  5'- gGCCAGCagcccCGCGUAGAGCUCGGc-- -3'
miRNA:   3'- -CGGUCGcaa--GCGUGUUUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 99941 0.7 0.995073
Target:  5'- uCCAGCGUcUUGCACAuguACUCGu--- -3'
miRNA:   3'- cGGUCGCA-AGCGUGUuu-UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 98325 0.69 0.997944
Target:  5'- cGCCAGCGgcggCGCGCcccGugUCGAc-- -3'
miRNA:   3'- -CGGUCGCaa--GCGUGuu-UugAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 92156 0.66 0.999923
Target:  5'- cUCGGCGagCGCGC---GCUCGGUGGa -3'
miRNA:   3'- cGGUCGCaaGCGUGuuuUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 85892 0.67 0.999257
Target:  5'- aCCAGCccgCGCACGAAcgcCUCGGUGg -3'
miRNA:   3'- cGGUCGcaaGCGUGUUUu--GAGUUAUu -5'
23701 3' -46.2 NC_005261.1 + 79734 0.69 0.996471
Target:  5'- cGCCgGGCGcgCGCAuCGAGuuCUCGAUGAa -3'
miRNA:   3'- -CGG-UCGCaaGCGU-GUUUu-GAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 76472 0.72 0.973201
Target:  5'- cGCCGGCGcgCGCGCGGAccccgagcccucggcGCUCGc--- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUU---------------UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 75319 0.66 0.999898
Target:  5'- cGUCGGCGg-CGCGCGGAGCcCuGUGAc -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGaGuUAUU- -5'
23701 3' -46.2 NC_005261.1 + 72236 0.73 0.968829
Target:  5'- gGCCGGCGgugCGCGCAAAG-UCGAc-- -3'
miRNA:   3'- -CGGUCGCaa-GCGUGUUUUgAGUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.