miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23701 3' -46.2 NC_005261.1 + 39993 0.74 0.949117
Target:  5'- cGCCGGCGUgCGUgaaggcguacgaGCAGAACUCGGg-- -3'
miRNA:   3'- -CGGUCGCAaGCG------------UGUUUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 40263 0.72 0.977633
Target:  5'- uGgCGGCGgcCGCgGCGGGGCUCAGUAGa -3'
miRNA:   3'- -CgGUCGCaaGCG-UGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 44982 0.66 0.999898
Target:  5'- gGCCcgGGCGggcCGcCACAGGuGCUCGAUGAc -3'
miRNA:   3'- -CGG--UCGCaa-GC-GUGUUU-UGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 48211 0.66 0.999866
Target:  5'- gGCCGGCGcgCGUuuCAGAGCgcgCAAa-- -3'
miRNA:   3'- -CGGUCGCaaGCGu-GUUUUGa--GUUauu -5'
23701 3' -46.2 NC_005261.1 + 53489 0.66 0.999825
Target:  5'- aCUAGCGcUCGCGCcaGGGGCUCGu--- -3'
miRNA:   3'- cGGUCGCaAGCGUG--UUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 54020 0.68 0.998606
Target:  5'- cGCgAGCGcUUCGCGCAcgcGCUCcGUGu -3'
miRNA:   3'- -CGgUCGC-AAGCGUGUuu-UGAGuUAUu -5'
23701 3' -46.2 NC_005261.1 + 56367 0.66 0.999825
Target:  5'- aCCGGCGaggCGCACGucucccagGAGCUCGcgGGg -3'
miRNA:   3'- cGGUCGCaa-GCGUGU--------UUUGAGUuaUU- -5'
23701 3' -46.2 NC_005261.1 + 57684 0.69 0.997037
Target:  5'- aGCCGGCGgg-GCACAGGGC-CAGc-- -3'
miRNA:   3'- -CGGUCGCaagCGUGUUUUGaGUUauu -5'
23701 3' -46.2 NC_005261.1 + 59258 0.66 0.999866
Target:  5'- cGCCGGCGccacgcgUCGCACGGcGugUCGc--- -3'
miRNA:   3'- -CGGUCGCa------AGCGUGUU-UugAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 61230 0.73 0.96541
Target:  5'- cGCuCGGCGUUCGgCGCG-AGCUCGAc-- -3'
miRNA:   3'- -CG-GUCGCAAGC-GUGUuUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 63625 0.66 0.999866
Target:  5'- cCCAGCGUUgacgcugucgCGCACGAAGC-CGu--- -3'
miRNA:   3'- cGGUCGCAA----------GCGUGUUUUGaGUuauu -5'
23701 3' -46.2 NC_005261.1 + 68156 0.73 0.961736
Target:  5'- gGCCGGCuacacgCGCGCGGAGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaa---GCGUGUUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 68536 0.68 0.999058
Target:  5'- cGCCGGCGccCGCGCGcccccugcugcgcGGGCUCuuUGAg -3'
miRNA:   3'- -CGGUCGCaaGCGUGU-------------UUUGAGuuAUU- -5'
23701 3' -46.2 NC_005261.1 + 69056 0.71 0.984452
Target:  5'- uGCCAGCGcUUCGCGCuauGC-CAGUu- -3'
miRNA:   3'- -CGGUCGC-AAGCGUGuuuUGaGUUAuu -5'
23701 3' -46.2 NC_005261.1 + 71497 0.67 0.999528
Target:  5'- gGCCAG-GUgCGCGCGAAAgUCGGc-- -3'
miRNA:   3'- -CGGUCgCAaGCGUGUUUUgAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 72236 0.73 0.968829
Target:  5'- gGCCGGCGgugCGCGCAAAG-UCGAc-- -3'
miRNA:   3'- -CGGUCGCaa-GCGUGUUUUgAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 75319 0.66 0.999898
Target:  5'- cGUCGGCGg-CGCGCGGAGCcCuGUGAc -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGaGuUAUU- -5'
23701 3' -46.2 NC_005261.1 + 76472 0.72 0.973201
Target:  5'- cGCCGGCGcgCGCGCGGAccccgagcccucggcGCUCGc--- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUU---------------UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 79734 0.69 0.996471
Target:  5'- cGCCgGGCGcgCGCAuCGAGuuCUCGAUGAa -3'
miRNA:   3'- -CGG-UCGCaaGCGU-GUUUu-GAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 85892 0.67 0.999257
Target:  5'- aCCAGCccgCGCACGAAcgcCUCGGUGg -3'
miRNA:   3'- cGGUCGcaaGCGUGUUUu--GAGUUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.