miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23701 3' -46.2 NC_005261.1 + 12321 0.67 0.999528
Target:  5'- aGCCGGCGggCGCGC---GCUUGGc-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 19377 0.67 0.999406
Target:  5'- uGCCAGCcaggcCGUaguaGCGGGGCUCGGUGAu -3'
miRNA:   3'- -CGGUCGcaa--GCG----UGUUUUGAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 85892 0.67 0.999257
Target:  5'- aCCAGCccgCGCACGAAcgcCUCGGUGg -3'
miRNA:   3'- cGGUCGcaaGCGUGUUUu--GAGUUAUu -5'
23701 3' -46.2 NC_005261.1 + 68536 0.68 0.999058
Target:  5'- cGCCGGCGccCGCGCGcccccugcugcgcGGGCUCuuUGAg -3'
miRNA:   3'- -CGGUCGCaaGCGUGU-------------UUUGAGuuAUU- -5'
23701 3' -46.2 NC_005261.1 + 54020 0.68 0.998606
Target:  5'- cGCgAGCGcUUCGCGCAcgcGCUCcGUGu -3'
miRNA:   3'- -CGgUCGC-AAGCGUGUuu-UGAGuUAUu -5'
23701 3' -46.2 NC_005261.1 + 1897 0.68 0.998606
Target:  5'- cGCCAGCG--CGCGCc--GCUCAGg-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 98325 0.69 0.997944
Target:  5'- cGCCAGCGgcggCGCGCcccGugUCGAc-- -3'
miRNA:   3'- -CGGUCGCaa--GCGUGuu-UugAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 3871 0.69 0.997944
Target:  5'- gGCCGGCGagcacggCGCGCA--GCUCGGc-- -3'
miRNA:   3'- -CGGUCGCaa-----GCGUGUuuUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 19279 0.69 0.997944
Target:  5'- cGCCAGCGUcUCGUACGcGACg------ -3'
miRNA:   3'- -CGGUCGCA-AGCGUGUuUUGaguuauu -5'
23701 3' -46.2 NC_005261.1 + 107617 0.69 0.997525
Target:  5'- gGCaCAGCGUccgUGCGCGgGAACUCGAg-- -3'
miRNA:   3'- -CG-GUCGCAa--GCGUGU-UUUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 3800 0.69 0.997525
Target:  5'- cGCCAGC--UCGCGCAGccGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaAGCGUGUUu-UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 57684 0.69 0.997037
Target:  5'- aGCCGGCGgg-GCACAGGGC-CAGc-- -3'
miRNA:   3'- -CGGUCGCaagCGUGUUUUGaGUUauu -5'
23701 3' -46.2 NC_005261.1 + 113243 0.69 0.996471
Target:  5'- cGCgCAGCaaGUUCGCGCGcGGGCUCAu--- -3'
miRNA:   3'- -CG-GUCG--CAAGCGUGU-UUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 79734 0.69 0.996471
Target:  5'- cGCCgGGCGcgCGCAuCGAGuuCUCGAUGAa -3'
miRNA:   3'- -CGG-UCGCaaGCGU-GUUUu-GAGUUAUU- -5'
23701 3' -46.2 NC_005261.1 + 99941 0.7 0.995073
Target:  5'- uCCAGCGUcUUGCACAuguACUCGu--- -3'
miRNA:   3'- cGGUCGCA-AGCGUGUuu-UGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 105137 0.7 0.994221
Target:  5'- cGCCGGCG--CGCGCAGguccucgcGGCUCGAg-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUU--------UUGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 122323 0.7 0.992163
Target:  5'- gGCCGGCGgucagguggCGCucGCAGAGCUCGc--- -3'
miRNA:   3'- -CGGUCGCaa-------GCG--UGUUUUGAGUuauu -5'
23701 3' -46.2 NC_005261.1 + 39004 0.7 0.990936
Target:  5'- uGCCAGCGcgcccaCGCGCAGAGCguccgCGAg-- -3'
miRNA:   3'- -CGGUCGCaa----GCGUGUUUUGa----GUUauu -5'
23701 3' -46.2 NC_005261.1 + 5137 0.71 0.989562
Target:  5'- cGCCGGCGcUCGCGCGc--CUCGGc-- -3'
miRNA:   3'- -CGGUCGCaAGCGUGUuuuGAGUUauu -5'
23701 3' -46.2 NC_005261.1 + 100274 0.71 0.989562
Target:  5'- cGCCGGUGg-CGCACGAAGCggCAGa-- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGa-GUUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.