miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 23190 0.68 0.742541
Target:  5'- gGCCCAg----CGCC-CGUGCGuCCGCGg -3'
miRNA:   3'- -CGGGUacaugGUGGuGUACGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 24414 0.66 0.833346
Target:  5'- uGCCCGgacauagACCACCuGCGgucgcucaGCGUCGCGa -3'
miRNA:   3'- -CGGGUaca----UGGUGG-UGUa-------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 24517 0.66 0.865019
Target:  5'- uGCuCCggGUGCCACCuguaGCG-GCGaCGCGg -3'
miRNA:   3'- -CG-GGuaCAUGGUGG----UGUaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 24909 0.69 0.682858
Target:  5'- cGCCCGaaccUGCCGCUgauGCGcGCGCUGCGa -3'
miRNA:   3'- -CGGGUac--AUGGUGG---UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 25424 0.66 0.872429
Target:  5'- uGUCCAcGgcgGCCGCCAC---CGCCGCc -3'
miRNA:   3'- -CGGGUaCa--UGGUGGUGuacGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 26631 0.68 0.761763
Target:  5'- aGCUCGUGcACCugCGCugcGCGCC-CGg -3'
miRNA:   3'- -CGGGUACaUGGugGUGua-CGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 26764 0.72 0.540728
Target:  5'- gGCgCCGUGccGCCGCCGCccGCcGCCGCc -3'
miRNA:   3'- -CG-GGUACa-UGGUGGUGuaCG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 27433 0.69 0.707021
Target:  5'- gGCCCAcccgggagagcugcaUGUacGCCGCCuuCGUGCGCCuGgGg -3'
miRNA:   3'- -CGGGU---------------ACA--UGGUGGu-GUACGCGG-CgC- -5'
23705 3' -56.9 NC_005261.1 + 28023 0.74 0.409756
Target:  5'- -aCUcgGgcgACCGCCGCAUgGCGCUGCGg -3'
miRNA:   3'- cgGGuaCa--UGGUGGUGUA-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 28079 0.68 0.771206
Target:  5'- cGCCgA-GUacggcaaccgcGCCGCCGCGgacGCGCUGCGc -3'
miRNA:   3'- -CGGgUaCA-----------UGGUGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 28404 0.66 0.849576
Target:  5'- cGCCCcggcaggucgucGUGgACaCGcCCGCcgGCGCCGCc -3'
miRNA:   3'- -CGGG------------UACaUG-GU-GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 28631 0.66 0.841556
Target:  5'- uCCCG---GCCGCCGCGU-CGCCGUc -3'
miRNA:   3'- cGGGUacaUGGUGGUGUAcGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 28859 0.67 0.798756
Target:  5'- cGCCCGccgcggGCCcccucGCCACAacCGCCGCGg -3'
miRNA:   3'- -CGGGUaca---UGG-----UGGUGUacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 29076 0.66 0.833346
Target:  5'- cGCCCug--GCCuCCGCGaGCgcgGCCGCGg -3'
miRNA:   3'- -CGGGuacaUGGuGGUGUaCG---CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 29403 0.68 0.752205
Target:  5'- gGUCCAcuccACCACCAC--GCGCUGCGc -3'
miRNA:   3'- -CGGGUaca-UGGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 30076 0.78 0.237011
Target:  5'- uCCCAgacgGCCGCCGCGUGCuCCGCGa -3'
miRNA:   3'- cGGGUaca-UGGUGGUGUACGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 30497 0.7 0.64211
Target:  5'- gGCCCGcuUGUccgcggccgcgGCCucgGCCACGaGUGCCGCGc -3'
miRNA:   3'- -CGGGU--ACA-----------UGG---UGGUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 30531 0.67 0.80765
Target:  5'- cGCCCucgccgGCCGCC-CGcGCGCuCGCGc -3'
miRNA:   3'- -CGGGuaca--UGGUGGuGUaCGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 30713 0.73 0.491923
Target:  5'- cGCCgGgcguUGCCGCCGCGgcggggGCGCCGCc -3'
miRNA:   3'- -CGGgUac--AUGGUGGUGUa-----CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 30947 0.66 0.849576
Target:  5'- cGUCCAcGUugGCCACCGCcccgGCaCCGCa -3'
miRNA:   3'- -CGGGUaCA--UGGUGGUGua--CGcGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.