miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 17750 0.66 0.857399
Target:  5'- gGCCC-UGUGCCugCggcGCAagGCGCgggCGCGc -3'
miRNA:   3'- -CGGGuACAUGGugG---UGUa-CGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 17916 0.69 0.712013
Target:  5'- gGCCCGUcGacuacaccugcacUGCCACCGgcuacCcgGCGCCGCu -3'
miRNA:   3'- -CGGGUA-C-------------AUGGUGGU-----GuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 18206 0.69 0.692962
Target:  5'- cGCCCAc---CCGCC-CAaccUGCGCUGCGa -3'
miRNA:   3'- -CGGGUacauGGUGGuGU---ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 18375 0.67 0.795155
Target:  5'- cGgCCGUGUGCCgcGCCGCcgaguacuaccCGCCGCGc -3'
miRNA:   3'- -CgGGUACAUGG--UGGUGuac--------GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 18506 0.67 0.816385
Target:  5'- aGCCgagggCGUGUA-CACCug--GCGCCGCGa -3'
miRNA:   3'- -CGG-----GUACAUgGUGGuguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 18866 0.66 0.861996
Target:  5'- gGCCCcgGUccccgcgGCCgagcaaggccccGCCGCGgggccgcaaguggaUGCGCUGCGa -3'
miRNA:   3'- -CGGGuaCA-------UGG------------UGGUGU--------------ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 19479 0.67 0.798756
Target:  5'- cGUCUggGUccGgCGCCGCGggcgcgGCGCCGCGc -3'
miRNA:   3'- -CGGGuaCA--UgGUGGUGUa-----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 19518 0.68 0.732781
Target:  5'- gGCCC-UGgccucgGCCACCGCGggcGCGCUGg- -3'
miRNA:   3'- -CGGGuACa-----UGGUGGUGUa--CGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 19766 0.7 0.662533
Target:  5'- uGCCCug--GCCGCCGCG-GCGgCGCu -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 19973 0.7 0.662533
Target:  5'- aGCCgCGcuggcUGUcGCCGCCGCGgacGcCGCCGCGg -3'
miRNA:   3'- -CGG-GU-----ACA-UGGUGGUGUa--C-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 20004 0.74 0.409756
Target:  5'- gGCCCGaGgcgcugGCgGCCGCggGCGCCGCa -3'
miRNA:   3'- -CGGGUaCa-----UGgUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 20304 0.68 0.779599
Target:  5'- cGCUCGUcugcuggcGgcCCGCCGCGcagacgcUGCGCCGCc -3'
miRNA:   3'- -CGGGUA--------CauGGUGGUGU-------ACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 20340 0.7 0.662533
Target:  5'- cGCCCGcgcUGgcgGCCGCgGCA-GCGgCCGCa -3'
miRNA:   3'- -CGGGU---ACa--UGGUGgUGUaCGC-GGCGc -5'
23705 3' -56.9 NC_005261.1 + 20449 0.66 0.865019
Target:  5'- gGCCCGUGcgcgcucGCUGCUACGggcGCGCuCGCu -3'
miRNA:   3'- -CGGGUACa------UGGUGGUGUa--CGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 20667 0.68 0.732781
Target:  5'- gGCCCGcaaGCgGCCGCGcgcugGCGCCGCc -3'
miRNA:   3'- -CGGGUacaUGgUGGUGUa----CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 20871 0.68 0.761763
Target:  5'- cGCCacgaugagCGUGU-CCACCGCG-GCGCCGg- -3'
miRNA:   3'- -CGG--------GUACAuGGUGGUGUaCGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 21806 0.7 0.662533
Target:  5'- cGCCgAg--GCCACCGCcaagAUGCuGCCGCa -3'
miRNA:   3'- -CGGgUacaUGGUGGUG----UACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 22040 0.68 0.756041
Target:  5'- cCCCGUgcggguucguccGUGCCGCCGCGcGCaaugccgaucgggggGCCGCGu -3'
miRNA:   3'- cGGGUA------------CAUGGUGGUGUaCG---------------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 22474 0.66 0.841556
Target:  5'- aGCgCCG---GCCGCCGCGUcCGCgCGCGg -3'
miRNA:   3'- -CG-GGUacaUGGUGGUGUAcGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 22923 0.68 0.729836
Target:  5'- cGCCUcgGUGUcggucgcgggcucgGCCGCgGCGgcGCGCCGCa -3'
miRNA:   3'- -CGGG--UACA--------------UGGUGgUGUa-CGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.