miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 10611 0.69 0.672712
Target:  5'- cGCCCGgcUGCUcgaGCgGCGggccgGCGCCGCGg -3'
miRNA:   3'- -CGGGUacAUGG---UGgUGUa----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 11322 0.8 0.189922
Target:  5'- gGUCCAUgGUGCCGCCGCc-GCGCCGCc -3'
miRNA:   3'- -CGGGUA-CAUGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 11783 0.69 0.703016
Target:  5'- gGCCCGcGUACCGCUcuuCccGCGCgCGCa -3'
miRNA:   3'- -CGGGUaCAUGGUGGu--GuaCGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 11864 0.66 0.865019
Target:  5'- cGCCCGcgc-CCGCCGCGccucggccacGCGCCGCc -3'
miRNA:   3'- -CGGGUacauGGUGGUGUa---------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 12156 0.72 0.51122
Target:  5'- cGCCgGUaGUuuaGCCGCCGCAgcucCGCCGCGu -3'
miRNA:   3'- -CGGgUA-CA---UGGUGGUGUac--GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 12686 0.69 0.703016
Target:  5'- gGCCCGgcgacgGCCGCCGCggGCucggcuggggccGCCGCa -3'
miRNA:   3'- -CGGGUaca---UGGUGGUGuaCG------------CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 13257 0.7 0.662533
Target:  5'- cGUCUGUGUccauAgCAUCGCcgGCGCCGUGa -3'
miRNA:   3'- -CGGGUACA----UgGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 13504 0.7 0.639043
Target:  5'- gGCCCggGUuccuggccgcccccGCCGCCACGcgGgaaGCCGCGg -3'
miRNA:   3'- -CGGGuaCA--------------UGGUGGUGUa-Cg--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 13851 0.7 0.662533
Target:  5'- aGCCCAUgcggcGUACCgGCCAucuccCAggcGCGCCGCu -3'
miRNA:   3'- -CGGGUA-----CAUGG-UGGU-----GUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 13974 0.66 0.872429
Target:  5'- aGCgCCAUG-GCCugCuuCAUcgcGCGCCGCc -3'
miRNA:   3'- -CG-GGUACaUGGugGu-GUA---CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 14157 0.81 0.15517
Target:  5'- aGCCCAaccGCCGCCGCGggcagGCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGUa----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 14228 0.66 0.857399
Target:  5'- aGCCCAuUGaGCCGCgAaagaGCGUCGCGu -3'
miRNA:   3'- -CGGGU-ACaUGGUGgUgua-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 14815 0.7 0.631883
Target:  5'- gGCCCccGUA-CACCGC-UGCGCCGg- -3'
miRNA:   3'- -CGGGuaCAUgGUGGUGuACGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 15202 0.68 0.761763
Target:  5'- gGCUgGUGUgggcggacccaGCCGCCGCGUaaGCGCgGCc -3'
miRNA:   3'- -CGGgUACA-----------UGGUGGUGUA--CGCGgCGc -5'
23705 3' -56.9 NC_005261.1 + 15574 0.69 0.682858
Target:  5'- cGCCC----GCCAgCACccGCGCUGCGg -3'
miRNA:   3'- -CGGGuacaUGGUgGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 15856 0.74 0.433524
Target:  5'- gGCCgCAUGUAguacauguacuucuCCACCGCAcgcaagGCGCUGCGc -3'
miRNA:   3'- -CGG-GUACAU--------------GGUGGUGUa-----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 16472 0.68 0.752205
Target:  5'- cGCgCCGUGcGCCGCCACGcucuucagcaGCGCCaGCu -3'
miRNA:   3'- -CG-GGUACaUGGUGGUGUa---------CGCGG-CGc -5'
23705 3' -56.9 NC_005261.1 + 16758 0.71 0.570787
Target:  5'- cGCUCGgcgGCCGCCGCcgGCGagCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUGGUGuaCGCg-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 16987 0.68 0.780525
Target:  5'- uGCCCGaGUGCgACgGC-UGCcGCCGCc -3'
miRNA:   3'- -CGGGUaCAUGgUGgUGuACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 17427 0.67 0.798756
Target:  5'- cGCCCcgcggggcgcGUGCCGCCGCAgGCcCCGUa -3'
miRNA:   3'- -CGGGua--------CAUGGUGGUGUaCGcGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.