miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 74620 0.75 0.376076
Target:  5'- aGCCCAc--GCCGagguCCACGUGCGCgCGCGg -3'
miRNA:   3'- -CGGGUacaUGGU----GGUGUACGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 33947 0.75 0.376076
Target:  5'- gGCCCGcGUcGCCGCCGCcgGCGgCGCc -3'
miRNA:   3'- -CGGGUaCA-UGGUGGUGuaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 2811 0.75 0.376076
Target:  5'- cCCCAUcGUgGCCACgGCcgGCGCCGUGc -3'
miRNA:   3'- cGGGUA-CA-UGGUGgUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 84352 0.75 0.392681
Target:  5'- cGCuCCGUGUACCGCgCGCGgUGCGCUuCGg -3'
miRNA:   3'- -CG-GGUACAUGGUG-GUGU-ACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 4040 0.75 0.392681
Target:  5'- aGCCCccGcGCCGCCGCGcggggggcgGCGCCGCu -3'
miRNA:   3'- -CGGGuaCaUGGUGGUGUa--------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 84144 0.75 0.392681
Target:  5'- cGCUCAUGUGCaGCgCGCccugGCGCCGCGc -3'
miRNA:   3'- -CGGGUACAUGgUG-GUGua--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 20004 0.74 0.409756
Target:  5'- gGCCCGaGgcgcugGCgGCCGCggGCGCCGCa -3'
miRNA:   3'- -CGGGUaCa-----UGgUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 77969 0.74 0.409756
Target:  5'- gGCCCGgg-GCCGCCGCGcucGCGUCGCu -3'
miRNA:   3'- -CGGGUacaUGGUGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 28023 0.74 0.409756
Target:  5'- -aCUcgGgcgACCGCCGCAUgGCGCUGCGg -3'
miRNA:   3'- cgGGuaCa--UGGUGGUGUA-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 80797 0.74 0.418464
Target:  5'- cGUCgAUGUGCCACCugGcgGCGCaCGCc -3'
miRNA:   3'- -CGGgUACAUGGUGGugUa-CGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 38542 0.74 0.427285
Target:  5'- cGCCCAgcgGcaccgGCCGCCGC--GCGCCGCc -3'
miRNA:   3'- -CGGGUa--Ca----UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 94619 0.74 0.427285
Target:  5'- uGCUCGUGggGCgGCgCGCGgaggGCGCCGCGg -3'
miRNA:   3'- -CGGGUACa-UGgUG-GUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 15856 0.74 0.433524
Target:  5'- gGCCgCAUGUAguacauguacuucuCCACCGCAcgcaagGCGCUGCGc -3'
miRNA:   3'- -CGG-GUACAU--------------GGUGGUGUa-----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 93532 0.74 0.436214
Target:  5'- aGCCgCGaGgaagagcGCCGCCGCGaGCGCCGCGg -3'
miRNA:   3'- -CGG-GUaCa------UGGUGGUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 75883 0.73 0.454391
Target:  5'- gGCCCGUGU-UCugCAgGaagGCGCCGCGc -3'
miRNA:   3'- -CGGGUACAuGGugGUgUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 43505 0.73 0.454391
Target:  5'- gGCCCGcGUGCaGCCACAcGCGCgCGCu -3'
miRNA:   3'- -CGGGUaCAUGgUGGUGUaCGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 86531 0.73 0.454391
Target:  5'- cGCCUuc-UACgGCCACGUgaGCGCCGCGc -3'
miRNA:   3'- -CGGGuacAUGgUGGUGUA--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 71102 0.73 0.463631
Target:  5'- aGCCCccccGCCGCCGCGcgcGCGCCGCc -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 37801 0.73 0.472969
Target:  5'- cGCCCAggaGcGCCGCCACGcG-GCCGCGc -3'
miRNA:   3'- -CGGGUa--CaUGGUGGUGUaCgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 112586 0.73 0.472969
Target:  5'- aGCUCAgGcGCCAUCugGUgGCGCCGCGc -3'
miRNA:   3'- -CGGGUaCaUGGUGGugUA-CGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.