Results 21 - 40 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 33947 | 0.75 | 0.376076 |
Target: 5'- gGCCCGcGUcGCCGCCGCcgGCGgCGCc -3' miRNA: 3'- -CGGGUaCA-UGGUGGUGuaCGCgGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 4457 | 0.75 | 0.376076 |
Target: 5'- cGUUCGUGUACCugCGCcagGCGCgGCGc -3' miRNA: 3'- -CGGGUACAUGGugGUGua-CGCGgCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 2811 | 0.75 | 0.376076 |
Target: 5'- cCCCAUcGUgGCCACgGCcgGCGCCGUGc -3' miRNA: 3'- cGGGUA-CA-UGGUGgUGuaCGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 84352 | 0.75 | 0.392681 |
Target: 5'- cGCuCCGUGUACCGCgCGCGgUGCGCUuCGg -3' miRNA: 3'- -CG-GGUACAUGGUG-GUGU-ACGCGGcGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 84144 | 0.75 | 0.392681 |
Target: 5'- cGCUCAUGUGCaGCgCGCccugGCGCCGCGc -3' miRNA: 3'- -CGGGUACAUGgUG-GUGua--CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 4040 | 0.75 | 0.392681 |
Target: 5'- aGCCCccGcGCCGCCGCGcggggggcgGCGCCGCu -3' miRNA: 3'- -CGGGuaCaUGGUGGUGUa--------CGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 77969 | 0.74 | 0.409756 |
Target: 5'- gGCCCGgg-GCCGCCGCGcucGCGUCGCu -3' miRNA: 3'- -CGGGUacaUGGUGGUGUa--CGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 20004 | 0.74 | 0.409756 |
Target: 5'- gGCCCGaGgcgcugGCgGCCGCggGCGCCGCa -3' miRNA: 3'- -CGGGUaCa-----UGgUGGUGuaCGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 28023 | 0.74 | 0.409756 |
Target: 5'- -aCUcgGgcgACCGCCGCAUgGCGCUGCGg -3' miRNA: 3'- cgGGuaCa--UGGUGGUGUA-CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 80797 | 0.74 | 0.418464 |
Target: 5'- cGUCgAUGUGCCACCugGcgGCGCaCGCc -3' miRNA: 3'- -CGGgUACAUGGUGGugUa-CGCG-GCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 94619 | 0.74 | 0.427285 |
Target: 5'- uGCUCGUGggGCgGCgCGCGgaggGCGCCGCGg -3' miRNA: 3'- -CGGGUACa-UGgUG-GUGUa---CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 38542 | 0.74 | 0.427285 |
Target: 5'- cGCCCAgcgGcaccgGCCGCCGC--GCGCCGCc -3' miRNA: 3'- -CGGGUa--Ca----UGGUGGUGuaCGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 15856 | 0.74 | 0.433524 |
Target: 5'- gGCCgCAUGUAguacauguacuucuCCACCGCAcgcaagGCGCUGCGc -3' miRNA: 3'- -CGG-GUACAU--------------GGUGGUGUa-----CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 93532 | 0.74 | 0.436214 |
Target: 5'- aGCCgCGaGgaagagcGCCGCCGCGaGCGCCGCGg -3' miRNA: 3'- -CGG-GUaCa------UGGUGGUGUaCGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 75883 | 0.73 | 0.454391 |
Target: 5'- gGCCCGUGU-UCugCAgGaagGCGCCGCGc -3' miRNA: 3'- -CGGGUACAuGGugGUgUa--CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 86531 | 0.73 | 0.454391 |
Target: 5'- cGCCUuc-UACgGCCACGUgaGCGCCGCGc -3' miRNA: 3'- -CGGGuacAUGgUGGUGUA--CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 43505 | 0.73 | 0.454391 |
Target: 5'- gGCCCGcGUGCaGCCACAcGCGCgCGCu -3' miRNA: 3'- -CGGGUaCAUGgUGGUGUaCGCG-GCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 71102 | 0.73 | 0.463631 |
Target: 5'- aGCCCccccGCCGCCGCGcgcGCGCCGCc -3' miRNA: 3'- -CGGGuacaUGGUGGUGUa--CGCGGCGc -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 112586 | 0.73 | 0.472969 |
Target: 5'- aGCUCAgGcGCCAUCugGUgGCGCCGCGc -3' miRNA: 3'- -CGGGUaCaUGGUGGugUA-CGCGGCGC- -5' |
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23705 | 3' | -56.9 | NC_005261.1 | + | 37801 | 0.73 | 0.472969 |
Target: 5'- cGCCCAggaGcGCCGCCACGcG-GCCGCGc -3' miRNA: 3'- -CGGGUa--CaUGGUGGUGUaCgCGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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