miRNA display CGI


Results 41 - 60 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 108032 0.73 0.482401
Target:  5'- gGCCC-UGaagGCCGgCGCGccggGCGCCGCGg -3'
miRNA:   3'- -CGGGuACa--UGGUgGUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 53547 0.73 0.482401
Target:  5'- gGCCCAgc-ACCACCGCGg--GCCGCGu -3'
miRNA:   3'- -CGGGUacaUGGUGGUGUacgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 54230 0.73 0.482401
Target:  5'- cGCCCc--UGCCACCACcgcCGCCGCGc -3'
miRNA:   3'- -CGGGuacAUGGUGGUGuacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 44469 0.73 0.482401
Target:  5'- cGCCCGcgggcuUGcGCCGuCCGCggGCGCCGCc -3'
miRNA:   3'- -CGGGU------ACaUGGU-GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 118854 0.73 0.482401
Target:  5'- gGCCCGcGUcACCGCCA---GCGCCGUGg -3'
miRNA:   3'- -CGGGUaCA-UGGUGGUguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67764 0.73 0.488104
Target:  5'- gGCCCAgcaUGCCaagcGCCGCGgcgcugagguucgGCGCCGCGg -3'
miRNA:   3'- -CGGGUac-AUGG----UGGUGUa------------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 35581 0.73 0.489057
Target:  5'- cGCCCA---GCCGCCGCGcgccggucugcgccUcGCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGU--------------A-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 30713 0.73 0.491923
Target:  5'- cGCCgGgcguUGCCGCCGCGgcggggGCGCCGCc -3'
miRNA:   3'- -CGGgUac--AUGGUGGUGUa-----CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 136642 0.73 0.491923
Target:  5'- gGCCCAggcgcgugGCCACCguguagcgcACGUugGCGCCGCGg -3'
miRNA:   3'- -CGGGUaca-----UGGUGG---------UGUA--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 83023 0.73 0.491923
Target:  5'- gGCCCAgccUGgcccGCCGCCGC-UGCcGCCGCc -3'
miRNA:   3'- -CGGGU---ACa---UGGUGGUGuACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 136481 0.72 0.501531
Target:  5'- cGCUCAg--GCCAgCGCGcggcgcacUGCGCCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUgGUGU--------ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 94380 0.72 0.505397
Target:  5'- aGCCCGgcuucggcgcggcgGgcgGCCGCCGCGcgGCGgCCGCGg -3'
miRNA:   3'- -CGGGUa-------------Ca--UGGUGGUGUa-CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 96354 0.72 0.51122
Target:  5'- gGCCCcgucgcgGUACUgcGCCGaauCGUGCGCCGCa -3'
miRNA:   3'- -CGGGua-----CAUGG--UGGU---GUACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 12156 0.72 0.51122
Target:  5'- cGCCgGUaGUuuaGCCGCCGCAgcucCGCCGCGu -3'
miRNA:   3'- -CGGgUA-CA---UGGUGGUGUac--GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 36807 0.72 0.51122
Target:  5'- cGCgCCGUG-GCCuCCGCGcGCGCCGCc -3'
miRNA:   3'- -CG-GGUACaUGGuGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 34243 0.72 0.51122
Target:  5'- cGCCag-GUcgGCCACCGCGccguccgcggGCGCCGCGc -3'
miRNA:   3'- -CGGguaCA--UGGUGGUGUa---------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 69530 0.72 0.520986
Target:  5'- cGCCCuc-UGCCGCgGCuGUGCGCCGUc -3'
miRNA:   3'- -CGGGuacAUGGUGgUG-UACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 95045 0.72 0.520986
Target:  5'- gGCUCGUGUGCCuggGgCugGUGCcGCUGCGg -3'
miRNA:   3'- -CGGGUACAUGG---UgGugUACG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 95715 0.72 0.520986
Target:  5'- cGgCCGg--GCCGCCGCcgGCaGCCGCGc -3'
miRNA:   3'- -CgGGUacaUGGUGGUGuaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 69753 0.72 0.529837
Target:  5'- cGCCCGcgaccgagGUcaucgucACCGCCGCccGCGCCGCc -3'
miRNA:   3'- -CGGGUa-------CA-------UGGUGGUGuaCGCGGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.