Results 41 - 60 of 341 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 94090 | 0.66 | 0.857399 |
Target: 5'- gGgCCAgg-GCCGcugcCCGCggGCGCCGCa -3' miRNA: 3'- -CgGGUacaUGGU----GGUGuaCGCGGCGc -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 70602 | 0.66 | 0.857399 |
Target: 5'- cGCCCccuccuCCGCC-UcgGCGCCGCc -3' miRNA: 3'- -CGGGuacau-GGUGGuGuaCGCGGCGc -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 37484 | 0.66 | 0.857399 |
Target: 5'- cGCCgCGc--ACCGCCGCGaGCGUCGCc -3' miRNA: 3'- -CGG-GUacaUGGUGGUGUaCGCGGCGc -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 17750 | 0.66 | 0.857399 |
Target: 5'- gGCCC-UGUGCCugCggcGCAagGCGCgggCGCGc -3' miRNA: 3'- -CGGGuACAUGGugG---UGUa-CGCG---GCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 2758 | 0.66 | 0.857399 |
Target: 5'- cGCCCuucAUGcGCUGCUACcUGCGCgggCGCGg -3' miRNA: 3'- -CGGG---UACaUGGUGGUGuACGCG---GCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 107435 | 0.66 | 0.857399 |
Target: 5'- gGCCuCGaGgcCCGCCGCGacgGCccGCCGCGg -3' miRNA: 3'- -CGG-GUaCauGGUGGUGUa--CG--CGGCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 61488 | 0.66 | 0.857399 |
Target: 5'- cGCCCAcGUcGCgCugUGCGUGCugggccGCCGCGu -3' miRNA: 3'- -CGGGUaCA-UG-GugGUGUACG------CGGCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 38689 | 0.66 | 0.857399 |
Target: 5'- cGCgCCAgcu-CCGCCACGgucGCGCgCGUGg -3' miRNA: 3'- -CG-GGUacauGGUGGUGUa--CGCG-GCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 39623 | 0.66 | 0.849576 |
Target: 5'- uGCCgc--UGCCGCCGCcgGCcgccgGCCGCGc -3' miRNA: 3'- -CGGguacAUGGUGGUGuaCG-----CGGCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 76492 | 0.66 | 0.849576 |
Target: 5'- cGCCCGUGcgcACCACCGaggGC-CCGuCGa -3' miRNA: 3'- -CGGGUACa--UGGUGGUguaCGcGGC-GC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 83264 | 0.66 | 0.849576 |
Target: 5'- cGCUCAacUGCCgcuaGCCGCAagaugUGCGCgCGCGa -3' miRNA: 3'- -CGGGUacAUGG----UGGUGU-----ACGCG-GCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 132917 | 0.66 | 0.849576 |
Target: 5'- aGCCCcc--GCUAUCGCGcGCGCCGgGg -3' miRNA: 3'- -CGGGuacaUGGUGGUGUaCGCGGCgC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 134768 | 0.66 | 0.849576 |
Target: 5'- uGCCCGg--AgCACgCGCuccggGUGCGCCGCu -3' miRNA: 3'- -CGGGUacaUgGUG-GUG-----UACGCGGCGc -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 33589 | 0.66 | 0.849576 |
Target: 5'- uGCuCCAgcggGUcCCGcuCCGCAgcgGCGUCGCGg -3' miRNA: 3'- -CG-GGUa---CAuGGU--GGUGUa--CGCGGCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 30947 | 0.66 | 0.849576 |
Target: 5'- cGUCCAcGUugGCCACCGCcccgGCaCCGCa -3' miRNA: 3'- -CGGGUaCA--UGGUGGUGua--CGcGGCGc -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 93124 | 0.66 | 0.849576 |
Target: 5'- -aCCGUGc-CCGCCGcCGUGCuGCCGUa -3' miRNA: 3'- cgGGUACauGGUGGU-GUACG-CGGCGc -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 87104 | 0.66 | 0.849576 |
Target: 5'- cGUCC-UGgccgcgGCCACCuaccucgcgcacGCcgGCGCCGCc -3' miRNA: 3'- -CGGGuACa-----UGGUGG------------UGuaCGCGGCGc -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 86972 | 0.66 | 0.849576 |
Target: 5'- cGCCCAccgccugcUGgGCC-CCGgGcGCGCCGUGa -3' miRNA: 3'- -CGGGU--------ACaUGGuGGUgUaCGCGGCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 37367 | 0.66 | 0.849576 |
Target: 5'- cGCCUGUGaa-CGCgGCcgGCaGCCGCGc -3' miRNA: 3'- -CGGGUACaugGUGgUGuaCG-CGGCGC- -5' |
|||||||
23705 | 3' | -56.9 | NC_005261.1 | + | 5585 | 0.66 | 0.849576 |
Target: 5'- aGgCCAUGaGCCGCUACcUGCGCgacuuCGCu -3' miRNA: 3'- -CgGGUACaUGGUGGUGuACGCG-----GCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home