miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 28404 0.66 0.849576
Target:  5'- cGCCCcggcaggucgucGUGgACaCGcCCGCcgGCGCCGCc -3'
miRNA:   3'- -CGGG------------UACaUG-GU-GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 22474 0.66 0.841556
Target:  5'- aGCgCCG---GCCGCCGCGUcCGCgCGCGg -3'
miRNA:   3'- -CG-GGUacaUGGUGGUGUAcGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 28631 0.66 0.841556
Target:  5'- uCCCG---GCCGCCGCGU-CGCCGUc -3'
miRNA:   3'- cGGGUacaUGGUGGUGUAcGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 49550 0.66 0.841556
Target:  5'- gGCCCGgcgucgGCUACCugGgccGCGCCucGCGg -3'
miRNA:   3'- -CGGGUaca---UGGUGGugUa--CGCGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 100201 0.66 0.841556
Target:  5'- gGCCUggGcgcGCCGCgGCGUGCuGCUGCu -3'
miRNA:   3'- -CGGGuaCa--UGGUGgUGUACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 134156 0.66 0.841556
Target:  5'- -aCCAgGU-CCACCA---GCGCCGCGu -3'
miRNA:   3'- cgGGUaCAuGGUGGUguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 5785 0.66 0.841556
Target:  5'- gGCCCGgcgaGCCGCCAgGggGCGCUgGCGc -3'
miRNA:   3'- -CGGGUaca-UGGUGGUgUa-CGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 133470 0.66 0.841556
Target:  5'- uGCCUccGccgcgGCCGCgagCGCccGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCa----UGGUG---GUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 98150 0.66 0.841556
Target:  5'- gGCCCGgggGCCgugagcGCCAUGgcgGCGgCCGCGg -3'
miRNA:   3'- -CGGGUacaUGG------UGGUGUa--CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 79417 0.66 0.841556
Target:  5'- cGCCCGcGUcgaagGCCuCCACgggcggcgGUGCGCCGgGc -3'
miRNA:   3'- -CGGGUaCA-----UGGuGGUG--------UACGCGGCgC- -5'
23705 3' -56.9 NC_005261.1 + 78989 0.66 0.841556
Target:  5'- aGCCCGggcucGCCGgCGCcgGCGCUGUc -3'
miRNA:   3'- -CGGGUaca--UGGUgGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 61341 0.66 0.841556
Target:  5'- gGCCCucg-GCgACCGCGccuggccgGUGCCGCGc -3'
miRNA:   3'- -CGGGuacaUGgUGGUGUa-------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 49789 0.66 0.841556
Target:  5'- gGCCCGgcgGcGCCACgGuCGUGaCGCUGCu -3'
miRNA:   3'- -CGGGUa--CaUGGUGgU-GUAC-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 80062 0.66 0.841556
Target:  5'- cGCCCGaGcACCGCCucGCGga-GCCGCGc -3'
miRNA:   3'- -CGGGUaCaUGGUGG--UGUacgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 70198 0.66 0.839929
Target:  5'- gGCCCccucgcccCCGCCGCcgGCGCgGCc -3'
miRNA:   3'- -CGGGuacau---GGUGGUGuaCGCGgCGc -5'
23705 3' -56.9 NC_005261.1 + 24414 0.66 0.833346
Target:  5'- uGCCCGgacauagACCACCuGCGgucgcucaGCGUCGCGa -3'
miRNA:   3'- -CGGGUaca----UGGUGG-UGUa-------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 29076 0.66 0.833346
Target:  5'- cGCCCug--GCCuCCGCGaGCgcgGCCGCGg -3'
miRNA:   3'- -CGGGuacaUGGuGGUGUaCG---CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 77631 0.66 0.833346
Target:  5'- aGCCCGUcuucAUCACCAUGgacGcCGCCGCGc -3'
miRNA:   3'- -CGGGUAca--UGGUGGUGUa--C-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 132044 0.66 0.833346
Target:  5'- uGCCCAccgGCCucgcGCCGguCcgGCGCCGCu -3'
miRNA:   3'- -CGGGUacaUGG----UGGU--GuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 32143 0.66 0.833346
Target:  5'- nGCCCuaccggGCCGCCGC---CGCCGCu -3'
miRNA:   3'- -CGGGuaca--UGGUGGUGuacGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.