miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 11864 0.66 0.865019
Target:  5'- cGCCCGcgc-CCGCCGCGccucggccacGCGCCGCc -3'
miRNA:   3'- -CGGGUacauGGUGGUGUa---------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 102786 0.66 0.865019
Target:  5'- cGCCCGgcc-CCGCCGCG-GCaGCCGUu -3'
miRNA:   3'- -CGGGUacauGGUGGUGUaCG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 63949 0.66 0.865019
Target:  5'- cGCCCccccggcgggggGUGggggcGCCGCCcCcgGCGCgGCGu -3'
miRNA:   3'- -CGGG------------UACa----UGGUGGuGuaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 55210 0.66 0.865019
Target:  5'- aGCUCG-GUGCgCAcCCGCA-GCuGCCGCGu -3'
miRNA:   3'- -CGGGUaCAUG-GU-GGUGUaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 24517 0.66 0.865019
Target:  5'- uGCuCCggGUGCCACCuguaGCG-GCGaCGCGg -3'
miRNA:   3'- -CG-GGuaCAUGGUGG----UGUaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 20449 0.66 0.865019
Target:  5'- gGCCCGUGcgcgcucGCUGCUACGggcGCGCuCGCu -3'
miRNA:   3'- -CGGGUACa------UGGUGGUGUa--CGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 134557 0.66 0.865019
Target:  5'- gGCCCGggcgcUGgcgGCagCGgCGCcgGCGCCGCGc -3'
miRNA:   3'- -CGGGU-----ACa--UG--GUgGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 110129 0.66 0.865019
Target:  5'- uGCUCGggggggcgcUGuUGCCGCCGCc-GCGgCCGCGg -3'
miRNA:   3'- -CGGGU---------AC-AUGGUGGUGuaCGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 54708 0.66 0.865019
Target:  5'- cGCgCAgcgcGCCGCCGaggcgGCGCCGCa -3'
miRNA:   3'- -CGgGUaca-UGGUGGUgua--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 47597 0.66 0.865019
Target:  5'- gGCCgGcgcGcGCUACCGCGUGCGCUGg- -3'
miRNA:   3'- -CGGgUa--CaUGGUGGUGUACGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 5431 0.66 0.865019
Target:  5'- cGCCgaCGUG-GCCGCCuuCGU-CGCCGCGc -3'
miRNA:   3'- -CGG--GUACaUGGUGGu-GUAcGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 2946 0.66 0.865019
Target:  5'- cGCCCAg--GCgG-CGCggGCGCUGCGg -3'
miRNA:   3'- -CGGGUacaUGgUgGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 110782 0.66 0.864267
Target:  5'- -gCCGUGUgcgccuuucauccACCGCCACcguUGCuuGCCGCc -3'
miRNA:   3'- cgGGUACA-------------UGGUGGUGu--ACG--CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 61625 0.66 0.862755
Target:  5'- cCCCGcGUucuucggcgcggacGCCcCCGCGcugGCGCCGCGc -3'
miRNA:   3'- cGGGUaCA--------------UGGuGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 18866 0.66 0.861996
Target:  5'- gGCCCcgGUccccgcgGCCgagcaaggccccGCCGCGgggccgcaaguggaUGCGCUGCGa -3'
miRNA:   3'- -CGGGuaCA-------UGG------------UGGUGU--------------ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 38689 0.66 0.857399
Target:  5'- cGCgCCAgcu-CCGCCACGgucGCGCgCGUGg -3'
miRNA:   3'- -CG-GGUacauGGUGGUGUa--CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 61488 0.66 0.857399
Target:  5'- cGCCCAcGUcGCgCugUGCGUGCugggccGCCGCGu -3'
miRNA:   3'- -CGGGUaCA-UG-GugGUGUACG------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107435 0.66 0.857399
Target:  5'- gGCCuCGaGgcCCGCCGCGacgGCccGCCGCGg -3'
miRNA:   3'- -CGG-GUaCauGGUGGUGUa--CG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 2758 0.66 0.857399
Target:  5'- cGCCCuucAUGcGCUGCUACcUGCGCgggCGCGg -3'
miRNA:   3'- -CGGG---UACaUGGUGGUGuACGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 17750 0.66 0.857399
Target:  5'- gGCCC-UGUGCCugCggcGCAagGCGCgggCGCGc -3'
miRNA:   3'- -CGGGuACAUGGugG---UGUa-CGCG---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.