miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 508 0.69 0.692962
Target:  5'- gGCCagcgGUGCCGCCGCcgccccugGUGCuCGCGg -3'
miRNA:   3'- -CGGgua-CAUGGUGGUGua------CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 608 0.71 0.591052
Target:  5'- cGCCCccGggccccGCCGCCcgcGCcgGCGCCGCc -3'
miRNA:   3'- -CGGGuaCa-----UGGUGG---UGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 862 0.66 0.869491
Target:  5'- cGCCCAUG-GCCACCAagguuggcuugGUGCCa-- -3'
miRNA:   3'- -CGGGUACaUGGUGGUgua--------CGCGGcgc -5'
23705 3' -56.9 NC_005261.1 + 1460 0.7 0.662533
Target:  5'- gGCgCAUGUGgUGgUACAUGgGCCGCGu -3'
miRNA:   3'- -CGgGUACAUgGUgGUGUACgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 2758 0.66 0.857399
Target:  5'- cGCCCuucAUGcGCUGCUACcUGCGCgggCGCGg -3'
miRNA:   3'- -CGGG---UACaUGGUGGUGuACGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 2811 0.75 0.376076
Target:  5'- cCCCAUcGUgGCCACgGCcgGCGCCGUGc -3'
miRNA:   3'- cGGGUA-CA-UGGUGgUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 2946 0.66 0.865019
Target:  5'- cGCCCAg--GCgG-CGCggGCGCUGCGg -3'
miRNA:   3'- -CGGGUacaUGgUgGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 3848 0.68 0.732781
Target:  5'- cGCagaCGUG-ACCGCCccuugcuggGCG-GCGCCGCGg -3'
miRNA:   3'- -CGg--GUACaUGGUGG---------UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 4040 0.75 0.392681
Target:  5'- aGCCCccGcGCCGCCGCGcggggggcgGCGCCGCu -3'
miRNA:   3'- -CGGGuaCaUGGUGGUGUa--------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 4457 0.75 0.376076
Target:  5'- cGUUCGUGUACCugCGCcagGCGCgGCGc -3'
miRNA:   3'- -CGGGUACAUGGugGUGua-CGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 4624 0.67 0.80765
Target:  5'- cGCCCc-GUGCCuCCACGcccucgUGCGgCGCa -3'
miRNA:   3'- -CGGGuaCAUGGuGGUGU------ACGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 5365 0.67 0.816385
Target:  5'- aCCCGcgGgcgcGCCACCGCGcacgcacgugcUGCGCgGCGu -3'
miRNA:   3'- cGGGUa-Ca---UGGUGGUGU-----------ACGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 5431 0.66 0.865019
Target:  5'- cGCCgaCGUG-GCCGCCuuCGU-CGCCGCGc -3'
miRNA:   3'- -CGG--GUACaUGGUGGu-GUAcGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 5585 0.66 0.849576
Target:  5'- aGgCCAUGaGCCGCUACcUGCGCgacuuCGCu -3'
miRNA:   3'- -CgGGUACaUGGUGGUGuACGCG-----GCGc -5'
23705 3' -56.9 NC_005261.1 + 5785 0.66 0.841556
Target:  5'- gGCCCGgcgaGCCGCCAgGggGCGCUgGCGc -3'
miRNA:   3'- -CGGGUaca-UGGUGGUgUa-CGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 6893 0.67 0.798756
Target:  5'- cGCCUucuu-CCGgCACGUGCGCgCGCa -3'
miRNA:   3'- -CGGGuacauGGUgGUGUACGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 8067 0.68 0.771206
Target:  5'- aGCgCCAUGgacgGCCcgGCCGCGcucggggacGCGCUGCGg -3'
miRNA:   3'- -CG-GGUACa---UGG--UGGUGUa--------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 8272 0.66 0.872429
Target:  5'- cGCCU-UGgcgaGCCGCCGC--GCGCCGUc -3'
miRNA:   3'- -CGGGuACa---UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 9081 0.7 0.621656
Target:  5'- cGCCCcgc-GCCugCGCugGCGCCGCGu -3'
miRNA:   3'- -CGGGuacaUGGugGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 9592 0.68 0.732781
Target:  5'- cGCCCG-GgcCCGCgGCGgggcucGCGCUGCGg -3'
miRNA:   3'- -CGGGUaCauGGUGgUGUa-----CGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.