miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 138291 0.71 0.591052
Target:  5'- cGCCCccGggccccGCCGCCcgcGCcgGCGCCGCc -3'
miRNA:   3'- -CGGGuaCa-----UGGUGG---UGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 138191 0.69 0.692962
Target:  5'- gGCCagcgGUGCCGCCGCcgccccugGUGCuCGCGg -3'
miRNA:   3'- -CGGgua-CAUGGUGGUGua------CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 137771 0.7 0.64211
Target:  5'- uGCCCgacgcaggggauGUGgcgGCgGCCGCcaGCGCCGCGu -3'
miRNA:   3'- -CGGG------------UACa--UGgUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 137066 0.69 0.692962
Target:  5'- cGCUCcgGgacGCCGCCGCGccGCGCCuGCa -3'
miRNA:   3'- -CGGGuaCa--UGGUGGUGUa-CGCGG-CGc -5'
23705 3' -56.9 NC_005261.1 + 137014 0.71 0.611437
Target:  5'- gGUCCGcGUcCCagGCCACGccggGCGCCGCGg -3'
miRNA:   3'- -CGGGUaCAuGG--UGGUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 136709 0.71 0.601233
Target:  5'- cGCCCGUcGaGCCGCgGCAgcacGCGCUGCc -3'
miRNA:   3'- -CGGGUA-CaUGGUGgUGUa---CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 136642 0.73 0.491923
Target:  5'- gGCCCAggcgcgugGCCACCguguagcgcACGUugGCGCCGCGg -3'
miRNA:   3'- -CGGGUaca-----UGGUGG---------UGUA--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 136481 0.72 0.501531
Target:  5'- cGCUCAg--GCCAgCGCGcggcgcacUGCGCCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUgGUGU--------ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 136379 0.69 0.703016
Target:  5'- gGUCCAcggcGUcgaucacgaucaGCCGCCGCc-GCGCCGCGg -3'
miRNA:   3'- -CGGGUa---CA------------UGGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 136022 0.67 0.798756
Target:  5'- aGgCCAcGcGCCGCCGCA-GCGgCGCGc -3'
miRNA:   3'- -CgGGUaCaUGGUGGUGUaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 135667 0.78 0.248723
Target:  5'- gGCCCcgGccgACUugCGCuUGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCa--UGGugGUGuACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 135610 0.67 0.824953
Target:  5'- cGCCCccGagggGCUGCCGCcgGCGgCCGgGa -3'
miRNA:   3'- -CGGGuaCa---UGGUGGUGuaCGC-GGCgC- -5'
23705 3' -56.9 NC_005261.1 + 135074 0.76 0.321789
Target:  5'- gGCCCGcaUGUccuccACCuCCACccGCGCCGCGg -3'
miRNA:   3'- -CGGGU--ACA-----UGGuGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 134768 0.66 0.849576
Target:  5'- uGCCCGg--AgCACgCGCuccggGUGCGCCGCu -3'
miRNA:   3'- -CGGGUacaUgGUG-GUG-----UACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 134557 0.66 0.865019
Target:  5'- gGCCCGggcgcUGgcgGCagCGgCGCcgGCGCCGCGc -3'
miRNA:   3'- -CGGGU-----ACa--UG--GUgGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 134380 0.76 0.336682
Target:  5'- gGCUCAUGgccacgcagGCCGCCACGUGCGgCaGCGc -3'
miRNA:   3'- -CGGGUACa--------UGGUGGUGUACGCgG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 134263 0.69 0.722934
Target:  5'- gGCCCcgGcaGCC-CUGCAcGCGCCGCu -3'
miRNA:   3'- -CGGGuaCa-UGGuGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 134156 0.66 0.841556
Target:  5'- -aCCAgGU-CCACCA---GCGCCGCGu -3'
miRNA:   3'- cgGGUaCAuGGUGGUguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 134090 0.72 0.550694
Target:  5'- gGCCCcgcgGCCGCCGCGUaGCG-CGCGg -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUA-CGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 134017 0.68 0.761763
Target:  5'- cGCCCGc--GCCGCCGaa-GCGCaCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUGGUguaCGCG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.