miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 133884 0.68 0.771206
Target:  5'- gGCCCcaGUcGCgCGCCcgcGCggGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCA-UG-GUGG---UGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 133470 0.66 0.841556
Target:  5'- uGCCUccGccgcgGCCGCgagCGCccGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCa----UGGUG---GUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 132917 0.66 0.849576
Target:  5'- aGCCCcc--GCUAUCGCGcGCGCCGgGg -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUaCGCGGCgC- -5'
23705 3' -56.9 NC_005261.1 + 132175 0.68 0.780525
Target:  5'- cGCCCAg--ACCuggcgguCCAgGUGCGCC-CGg -3'
miRNA:   3'- -CGGGUacaUGGu------GGUgUACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 132044 0.66 0.833346
Target:  5'- uGCCCAccgGCCucgcGCCGguCcgGCGCCGCu -3'
miRNA:   3'- -CGGGUacaUGG----UGGU--GuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 130765 0.68 0.732781
Target:  5'- uGCCUcUGcUGCCGCCGC---UGCCGCGu -3'
miRNA:   3'- -CGGGuAC-AUGGUGGUGuacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 128161 0.69 0.722934
Target:  5'- uGCCCAggcgGgcCCGCgCACucgcCGCCGCGg -3'
miRNA:   3'- -CGGGUa---CauGGUG-GUGuac-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 127357 0.67 0.802332
Target:  5'- gGCCCGUcccccggcggcacucGggcGCCGCC-CAgGCGCCGCc -3'
miRNA:   3'- -CGGGUA---------------Ca--UGGUGGuGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 126472 0.7 0.631883
Target:  5'- gGCCCGgccgGcgGCUGCgGCGgcccGCGCCGCGg -3'
miRNA:   3'- -CGGGUa---Ca-UGGUGgUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 126256 0.71 0.591052
Target:  5'- cGCCC----GCCGCCGCG-GCGgCCGCGc -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUaCGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 126197 0.76 0.344315
Target:  5'- -aCCAUGcagcGCCGCCGCcgGUGCCGCc -3'
miRNA:   3'- cgGGUACa---UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 124737 0.69 0.682858
Target:  5'- cGCgCCGUGccGCCGCCGCGgggGgGgCGCGg -3'
miRNA:   3'- -CG-GGUACa-UGGUGGUGUa--CgCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 123609 0.66 0.872429
Target:  5'- cGCCCcgcgcagGUGCCGcucCCGCAggcUGCGCacgucCGCGg -3'
miRNA:   3'- -CGGGua-----CAUGGU---GGUGU---ACGCG-----GCGC- -5'
23705 3' -56.9 NC_005261.1 + 123122 0.69 0.692962
Target:  5'- cGCCCcgGcGgCGCCGCcgGgGCgCGCGg -3'
miRNA:   3'- -CGGGuaCaUgGUGGUGuaCgCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 121673 0.67 0.816385
Target:  5'- cGCgCcgGUACUggcccucggcgaGCCGCGcggGCGCCGCc -3'
miRNA:   3'- -CGgGuaCAUGG------------UGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 118979 0.66 0.865019
Target:  5'- gGCCCGUGUGCCgcGCCGaaguCGCCcagGCa -3'
miRNA:   3'- -CGGGUACAUGG--UGGUguacGCGG---CGc -5'
23705 3' -56.9 NC_005261.1 + 118854 0.73 0.482401
Target:  5'- gGCCCGcGUcACCGCCA---GCGCCGUGg -3'
miRNA:   3'- -CGGGUaCA-UGGUGGUguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 118168 0.68 0.761763
Target:  5'- cGCCCGcUGccugGCCAgCCGCuc-CGCCGCGc -3'
miRNA:   3'- -CGGGU-ACa---UGGU-GGUGuacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 118137 0.67 0.798756
Target:  5'- cGCuCCAUGggcgccgagaACCGCCGgGUcGUGUCGCGg -3'
miRNA:   3'- -CG-GGUACa---------UGGUGGUgUA-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 116621 0.66 0.857399
Target:  5'- cGCCgGgcgaGCCGCCGCGgcgcggGcCGCCGCa -3'
miRNA:   3'- -CGGgUaca-UGGUGGUGUa-----C-GCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.