miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 80986 0.83 0.119874
Target:  5'- cGCCCGUGauCCGCgGCcgGCGCCGCGa -3'
miRNA:   3'- -CGGGUACauGGUGgUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 14157 0.81 0.15517
Target:  5'- aGCCCAaccGCCGCCGCGggcagGCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGUa----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 11322 0.8 0.189922
Target:  5'- gGUCCAUgGUGCCGCCGCc-GCGCCGCc -3'
miRNA:   3'- -CGGGUA-CAUGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 34824 0.78 0.267182
Target:  5'- cCCCGUGccGCCGCCGCccGCGCCGUc -3'
miRNA:   3'- cGGGUACa-UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 30076 0.78 0.237011
Target:  5'- uCCCAgacgGCCGCCGCGUGCuCCGCGa -3'
miRNA:   3'- cGGGUaca-UGGUGGUGUACGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67842 0.78 0.260909
Target:  5'- cGCCCcac--CCGCCGCAggGCGCCGCGa -3'
miRNA:   3'- -CGGGuacauGGUGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 135667 0.78 0.248723
Target:  5'- gGCCCcgGccgACUugCGCuUGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCa--UGGugGUGuACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 45081 0.77 0.298304
Target:  5'- gGCCCGcguuguuagcggagUGUGCCACCACGUcCGCgCGCa -3'
miRNA:   3'- -CGGGU--------------ACAUGGUGGUGUAcGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 43774 0.77 0.273577
Target:  5'- cGCCCuc--GCCGCCGCcgGCGCCGUc -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 42377 0.77 0.286733
Target:  5'- uGCCCGUGcagauCCugCACGUGCucaacGCCGCGu -3'
miRNA:   3'- -CGGGUACau---GGugGUGUACG-----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 135074 0.76 0.321789
Target:  5'- gGCCCGcaUGUccuccACCuCCACccGCGCCGCGg -3'
miRNA:   3'- -CGGGU--ACA-----UGGuGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107245 0.76 0.314529
Target:  5'- cGCCCGgggaGUACCAcacgcCCGCGcccaGCGCCGCGg -3'
miRNA:   3'- -CGGGUa---CAUGGU-----GGUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108608 0.76 0.336682
Target:  5'- cGCCCAUGgcCUACCcggagGCcgGCGCCgGCGg -3'
miRNA:   3'- -CGGGUACauGGUGG-----UGuaCGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 106391 0.76 0.305277
Target:  5'- uGCCCGUGccGCCGCgcgaguaccggcagCGCGUGCuGCCGCGg -3'
miRNA:   3'- -CGGGUACa-UGGUG--------------GUGUACG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 134380 0.76 0.336682
Target:  5'- gGCUCAUGgccacgcagGCCGCCACGUGCGgCaGCGc -3'
miRNA:   3'- -CGGGUACa--------UGGUGGUGUACGCgG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 126197 0.76 0.344315
Target:  5'- -aCCAUGcagcGCCGCCGCcgGUGCCGCc -3'
miRNA:   3'- cgGGUACa---UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 2811 0.75 0.376076
Target:  5'- cCCCAUcGUgGCCACgGCcgGCGCCGUGc -3'
miRNA:   3'- cGGGUA-CA-UGGUGgUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 33519 0.75 0.352071
Target:  5'- cGUCgAUGUcagcgucgaucGCCGCCGCGUGCGCC-CGg -3'
miRNA:   3'- -CGGgUACA-----------UGGUGGUGUACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 74620 0.75 0.376076
Target:  5'- aGCCCAc--GCCGagguCCACGUGCGCgCGCGg -3'
miRNA:   3'- -CGGGUacaUGGU----GGUGUACGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 4457 0.75 0.376076
Target:  5'- cGUUCGUGUACCugCGCcagGCGCgGCGc -3'
miRNA:   3'- -CGGGUACAUGGugGUGua-CGCGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.