miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 45037 0.67 0.980493
Target:  5'- gCGCGCagcgCGCGCCAGUGCGCcggCGUgagcaGGa -3'
miRNA:   3'- -GUGUG----GUGCGGUCAUGUGaa-GUAg----CC- -5'
23705 5' -51.4 NC_005261.1 + 84835 0.67 0.980493
Target:  5'- cCGCGCCGCGgcCCAGgcGCACUagcggCcgCGGg -3'
miRNA:   3'- -GUGUGGUGC--GGUCa-UGUGAa----GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 96977 0.67 0.982402
Target:  5'- gCGCGCCACGaCgAGUcccuuggccgagcACACUUCGcagugCGGu -3'
miRNA:   3'- -GUGUGGUGC-GgUCA-------------UGUGAAGUa----GCC- -5'
23705 5' -51.4 NC_005261.1 + 61696 0.67 0.982605
Target:  5'- gACGCCG-GCCuGUu--CUUCGUCGGc -3'
miRNA:   3'- gUGUGGUgCGGuCAuguGAAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 29231 0.67 0.982605
Target:  5'- aGCACCAgGCCgggcaGGUucuccgcuagcaGCGCcgCGUCGGg -3'
miRNA:   3'- gUGUGGUgCGG-----UCA------------UGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 136891 0.67 0.982605
Target:  5'- -cCGCCGCgGCCGGca-GC-UCGUCGGg -3'
miRNA:   3'- guGUGGUG-CGGUCaugUGaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 109634 0.66 0.99069
Target:  5'- gACGCCGCgGCCGGggGCGCcugggCcgCGGc -3'
miRNA:   3'- gUGUGGUG-CGGUCa-UGUGaa---GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 114775 0.66 0.99069
Target:  5'- -cCGCCGCuGCCGGgGCGCggCggggGUCGGg -3'
miRNA:   3'- guGUGGUG-CGGUCaUGUGaaG----UAGCC- -5'
23705 5' -51.4 NC_005261.1 + 62232 0.66 0.99069
Target:  5'- gCGCACgACGCCGugGCGCUgCAguacgagCGGg -3'
miRNA:   3'- -GUGUGgUGCGGUcaUGUGAaGUa------GCC- -5'
23705 5' -51.4 NC_005261.1 + 99846 0.66 0.989373
Target:  5'- gGCACaGCGCCGGcGCGCggcCAUgCGGc -3'
miRNA:   3'- gUGUGgUGCGGUCaUGUGaa-GUA-GCC- -5'
23705 5' -51.4 NC_005261.1 + 106447 0.66 0.989373
Target:  5'- -cCGCgGCGCCAacGUGCGCUaCA-CGGu -3'
miRNA:   3'- guGUGgUGCGGU--CAUGUGAaGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 28255 0.66 0.987915
Target:  5'- aCGCACCcCGCCG--ACG--UCAUCGGc -3'
miRNA:   3'- -GUGUGGuGCGGUcaUGUgaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 86512 0.66 0.987915
Target:  5'- aGCGCCGCGCggcagcagCGGcGCGCUaCAUCGc -3'
miRNA:   3'- gUGUGGUGCG--------GUCaUGUGAaGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 67343 0.66 0.986307
Target:  5'- gACACCACGCC-GUgggccagccgccGCGCggCGggCGGg -3'
miRNA:   3'- gUGUGGUGCGGuCA------------UGUGaaGUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 90690 0.66 0.986307
Target:  5'- gGCGCCGCGUCG----GCggCGUCGGg -3'
miRNA:   3'- gUGUGGUGCGGUcaugUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 77691 0.66 0.98454
Target:  5'- aCACGCCGCGCguGgcgGCGCacgg-CGGu -3'
miRNA:   3'- -GUGUGGUGCGguCa--UGUGaaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 35664 0.66 0.98562
Target:  5'- cCGCGCCcgcCGCCAGggcguucuucaggGCGCUUgCcgCGGa -3'
miRNA:   3'- -GUGUGGu--GCGGUCa------------UGUGAA-GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 60836 0.66 0.98454
Target:  5'- gGCGCCGcCGCCAGUgGCGCcgCcgCGc -3'
miRNA:   3'- gUGUGGU-GCGGUCA-UGUGaaGuaGCc -5'
23705 5' -51.4 NC_005261.1 + 56234 0.66 0.98454
Target:  5'- uGC-CCGCGCCAGcaaGCGCggCG-CGGa -3'
miRNA:   3'- gUGuGGUGCGGUCa--UGUGaaGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 44069 0.66 0.98454
Target:  5'- gGCGCCagcccgaacucGCGCCGGUAgGCgucgaUCGUcCGGc -3'
miRNA:   3'- gUGUGG-----------UGCGGUCAUgUGa----AGUA-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.