Results 61 - 80 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 51652 | 0.68 | 0.960068 |
Target: 5'- -cCGCCGCGCCc-UGCA--UCAUCGGc -3' miRNA: 3'- guGUGGUGCGGucAUGUgaAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 76092 | 0.68 | 0.966986 |
Target: 5'- gGCGCCGCGCgGGcGCGCggCGgccccgCGGu -3' miRNA: 3'- gUGUGGUGCGgUCaUGUGaaGUa-----GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 117934 | 0.68 | 0.966986 |
Target: 5'- uGC-CCGCGCgGGUgugGCGCUUCcuugCGGa -3' miRNA: 3'- gUGuGGUGCGgUCA---UGUGAAGua--GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 137051 | 0.68 | 0.966986 |
Target: 5'- cCGCGCCGCGCC--UGCACcagCGUCu- -3' miRNA: 3'- -GUGUGGUGCGGucAUGUGaa-GUAGcc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 55103 | 0.68 | 0.970106 |
Target: 5'- gCACACCAgGCaCGGcUGCGCggggUCGugcagcUCGGg -3' miRNA: 3'- -GUGUGGUgCG-GUC-AUGUGa---AGU------AGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 43777 | 0.68 | 0.970106 |
Target: 5'- gCGCGCCcuCGCCGccgccgGCGCcgUCGUCGGc -3' miRNA: 3'- -GUGUGGu-GCGGUca----UGUGa-AGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 134641 | 0.68 | 0.966986 |
Target: 5'- gCGCACCGCGCCGccucuaGCGCcUCG-CGGc -3' miRNA: 3'- -GUGUGGUGCGGUca----UGUGaAGUaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 77276 | 0.69 | 0.947919 |
Target: 5'- gCGCGCUGCGCC-GUGCGCUgcuUCGc -3' miRNA: 3'- -GUGUGGUGCGGuCAUGUGAaguAGCc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 15545 | 0.69 | 0.933545 |
Target: 5'- uCAUACUccaGCCGGUACucgUCGUCGGc -3' miRNA: 3'- -GUGUGGug-CGGUCAUGugaAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 62269 | 0.69 | 0.943379 |
Target: 5'- cCGCGCCGCGCCGGcGCcCgUCGU-GGa -3' miRNA: 3'- -GUGUGGUGCGGUCaUGuGaAGUAgCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 47166 | 0.69 | 0.943379 |
Target: 5'- cCACGCCAagauCGCCGacccgGCGCUggaCAUCGGc -3' miRNA: 3'- -GUGUGGU----GCGGUca---UGUGAa--GUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 42610 | 0.69 | 0.943379 |
Target: 5'- gCGCGCUGCGCCGGcGCGCUgcuagcCGGc -3' miRNA: 3'- -GUGUGGUGCGGUCaUGUGAagua--GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 34927 | 0.69 | 0.947031 |
Target: 5'- cCGCGCCcguCGCCAGggcguccagcugGCGCaagacgUCGUCGGc -3' miRNA: 3'- -GUGUGGu--GCGGUCa-----------UGUGa-----AGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 8147 | 0.69 | 0.947919 |
Target: 5'- gGCGCCGCGCCAGcgGCucguACUg---CGGg -3' miRNA: 3'- gUGUGGUGCGGUCa-UG----UGAaguaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 31414 | 0.69 | 0.947919 |
Target: 5'- gGCGCgCGCGCCGc-GCACcgCGUCGGc -3' miRNA: 3'- gUGUG-GUGCGGUcaUGUGaaGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 135003 | 0.69 | 0.947919 |
Target: 5'- cCGCcaGCCGCGCCG--GCACUUCcgccggCGGg -3' miRNA: 3'- -GUG--UGGUGCGGUcaUGUGAAGua----GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 125739 | 0.69 | 0.952211 |
Target: 5'- gGgGCCGCGCCGGcGCgACaUCGUCGu -3' miRNA: 3'- gUgUGGUGCGGUCaUG-UGaAGUAGCc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 67008 | 0.7 | 0.922697 |
Target: 5'- cCGCGCCGCGacCCGGUACGCguggUAggCGGc -3' miRNA: 3'- -GUGUGGUGC--GGUCAUGUGaa--GUa-GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 137004 | 0.7 | 0.916892 |
Target: 5'- cCAgGCCACGCCGGgcgcCGCggCcgCGGc -3' miRNA: 3'- -GUgUGGUGCGGUCau--GUGaaGuaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 46644 | 0.7 | 0.916892 |
Target: 5'- gGCGCuCACGCCGGcgGCGCaaagUCGUCa- -3' miRNA: 3'- gUGUG-GUGCGGUCa-UGUGa---AGUAGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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