Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 84678 | 0.67 | 0.973009 |
Target: 5'- gCGCGCCGCgGCCAGcugcgGCGCgcccgCA-CGGg -3' miRNA: 3'- -GUGUGGUG-CGGUCa----UGUGaa---GUaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 79576 | 0.67 | 0.972729 |
Target: 5'- aCGCGCCGCGCCAcGUccuccaggcacccGCGCUggGUCu- -3' miRNA: 3'- -GUGUGGUGCGGU-CA-------------UGUGAagUAGcc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 70772 | 0.67 | 0.972446 |
Target: 5'- gACGCCGCGCCAaagaccacGUACGCcgagaacgCGGg -3' miRNA: 3'- gUGUGGUGCGGU--------CAUGUGaagua---GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 96977 | 0.67 | 0.982402 |
Target: 5'- gCGCGCCACGaCgAGUcccuuggccgagcACACUUCGcagugCGGu -3' miRNA: 3'- -GUGUGGUGC-GgUCA-------------UGUGAAGUa----GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 61696 | 0.67 | 0.982605 |
Target: 5'- gACGCCG-GCCuGUu--CUUCGUCGGc -3' miRNA: 3'- gUGUGGUgCGGuCAuguGAAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 31352 | 0.67 | 0.982605 |
Target: 5'- gCGCGCCacGCGCCGcGUACACcgccagCAUCu- -3' miRNA: 3'- -GUGUGG--UGCGGU-CAUGUGaa----GUAGcc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 69517 | 0.67 | 0.982605 |
Target: 5'- gGCugUGCGCCGucGUGCGCUgcg-CGGa -3' miRNA: 3'- gUGugGUGCGGU--CAUGUGAaguaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 80181 | 0.67 | 0.982605 |
Target: 5'- aGCGCgCGCGCCAGcaGCGCgcCcgCGGc -3' miRNA: 3'- gUGUG-GUGCGGUCa-UGUGaaGuaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 104014 | 0.67 | 0.982605 |
Target: 5'- gGCGCCGCGCgCAG-ACGCggcgcaggagUUUAUCGa -3' miRNA: 3'- gUGUGGUGCG-GUCaUGUG----------AAGUAGCc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 20144 | 0.67 | 0.982605 |
Target: 5'- cUACGCCGucugcggcgUGCCGGUGCACUgcgcgcacuUCGUgaCGGc -3' miRNA: 3'- -GUGUGGU---------GCGGUCAUGUGA---------AGUA--GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 58186 | 0.67 | 0.982605 |
Target: 5'- gUACAgCUugGCCAGcGCguuGCUgagCAUCGGc -3' miRNA: 3'- -GUGU-GGugCGGUCaUG---UGAa--GUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 69325 | 0.67 | 0.982605 |
Target: 5'- uCGCGCUAUGCCAGUuccugcugucGCGCUggggCAU-GGc -3' miRNA: 3'- -GUGUGGUGCGGUCA----------UGUGAa---GUAgCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 76014 | 0.67 | 0.982605 |
Target: 5'- gCGCGCCuGCGgCAGcgGCACcgUCGUgGGg -3' miRNA: 3'- -GUGUGG-UGCgGUCa-UGUGa-AGUAgCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 99038 | 0.67 | 0.982605 |
Target: 5'- gCGCGCgGCGgCAGc-CGCcUCAUCGGc -3' miRNA: 3'- -GUGUGgUGCgGUCauGUGaAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 136891 | 0.67 | 0.982605 |
Target: 5'- -cCGCCGCgGCCGGca-GC-UCGUCGGg -3' miRNA: 3'- guGUGGUG-CGGUCaugUGaAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 29231 | 0.67 | 0.982605 |
Target: 5'- aGCACCAgGCCgggcaGGUucuccgcuagcaGCGCcgCGUCGGg -3' miRNA: 3'- gUGUGGUgCGG-----UCA------------UGUGaaGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 117934 | 0.68 | 0.966986 |
Target: 5'- uGC-CCGCGCgGGUgugGCGCUUCcuugCGGa -3' miRNA: 3'- gUGuGGUGCGgUCA---UGUGAAGua--GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 137051 | 0.68 | 0.966986 |
Target: 5'- cCGCGCCGCGCC--UGCACcagCGUCu- -3' miRNA: 3'- -GUGUGGUGCGGucAUGUGaa-GUAGcc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 55103 | 0.68 | 0.970106 |
Target: 5'- gCACACCAgGCaCGGcUGCGCggggUCGugcagcUCGGg -3' miRNA: 3'- -GUGUGGUgCG-GUC-AUGUGa---AGU------AGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 76092 | 0.68 | 0.966986 |
Target: 5'- gGCGCCGCGCgGGcGCGCggCGgccccgCGGu -3' miRNA: 3'- gUGUGGUGCGgUCaUGUGaaGUa-----GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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