Results 21 - 40 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 70724 | 0.66 | 0.99069 |
Target: 5'- gCGCGCgGCGCCAG-GCGCggugagcgCGUCa- -3' miRNA: 3'- -GUGUGgUGCGGUCaUGUGaa------GUAGcc -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 109634 | 0.66 | 0.99069 |
Target: 5'- gACGCCGCgGCCGGggGCGCcugggCcgCGGc -3' miRNA: 3'- gUGUGGUG-CGGUCa-UGUGaa---GuaGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 114775 | 0.66 | 0.99069 |
Target: 5'- -cCGCCGCuGCCGGgGCGCggCggggGUCGGg -3' miRNA: 3'- guGUGGUG-CGGUCaUGUGaaG----UAGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 29976 | 0.66 | 0.989373 |
Target: 5'- -cCACCGCGCCugcGUGCACggcaaccgCGUCc- -3' miRNA: 3'- guGUGGUGCGGu--CAUGUGaa------GUAGcc -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 33542 | 0.66 | 0.989373 |
Target: 5'- gCGgACCGCGCgGGUcACGCacgCGUCGa -3' miRNA: 3'- -GUgUGGUGCGgUCA-UGUGaa-GUAGCc -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 110812 | 0.66 | 0.989373 |
Target: 5'- aGCACCGuCGCCGccgacuGUAC-CUUCGUUGc -3' miRNA: 3'- gUGUGGU-GCGGU------CAUGuGAAGUAGCc -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 34358 | 0.66 | 0.989373 |
Target: 5'- gCGCGCCGCGCaggaAGUACuGCcgCAgcgccUCGGc -3' miRNA: 3'- -GUGUGGUGCGg---UCAUG-UGaaGU-----AGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 99846 | 0.66 | 0.989373 |
Target: 5'- gGCACaGCGCCGGcGCGCggcCAUgCGGc -3' miRNA: 3'- gUGUGgUGCGGUCaUGUGaa-GUA-GCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 106447 | 0.66 | 0.989373 |
Target: 5'- -cCGCgGCGCCAacGUGCGCUaCA-CGGu -3' miRNA: 3'- guGUGgUGCGGU--CAUGUGAaGUaGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 28255 | 0.66 | 0.987915 |
Target: 5'- aCGCACCcCGCCG--ACG--UCAUCGGc -3' miRNA: 3'- -GUGUGGuGCGGUcaUGUgaAGUAGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 86512 | 0.66 | 0.987915 |
Target: 5'- aGCGCCGCGCggcagcagCGGcGCGCUaCAUCGc -3' miRNA: 3'- gUGUGGUGCG--------GUCaUGUGAaGUAGCc -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 66902 | 0.66 | 0.987915 |
Target: 5'- uGCGCgGCgGCCAgGUGCGCgcgaaaGUCGGc -3' miRNA: 3'- gUGUGgUG-CGGU-CAUGUGaag---UAGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 31352 | 0.67 | 0.982605 |
Target: 5'- gCGCGCCacGCGCCGcGUACACcgccagCAUCu- -3' miRNA: 3'- -GUGUGG--UGCGGU-CAUGUGaa----GUAGcc -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 69517 | 0.67 | 0.982605 |
Target: 5'- gGCugUGCGCCGucGUGCGCUgcg-CGGa -3' miRNA: 3'- gUGugGUGCGGU--CAUGUGAaguaGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 80181 | 0.67 | 0.982605 |
Target: 5'- aGCGCgCGCGCCAGcaGCGCgcCcgCGGc -3' miRNA: 3'- gUGUG-GUGCGGUCa-UGUGaaGuaGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 104014 | 0.67 | 0.982605 |
Target: 5'- gGCGCCGCGCgCAG-ACGCggcgcaggagUUUAUCGa -3' miRNA: 3'- gUGUGGUGCG-GUCaUGUG----------AAGUAGCc -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 20144 | 0.67 | 0.982605 |
Target: 5'- cUACGCCGucugcggcgUGCCGGUGCACUgcgcgcacuUCGUgaCGGc -3' miRNA: 3'- -GUGUGGU---------GCGGUCAUGUGA---------AGUA--GCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 58186 | 0.67 | 0.982605 |
Target: 5'- gUACAgCUugGCCAGcGCguuGCUgagCAUCGGc -3' miRNA: 3'- -GUGU-GGugCGGUCaUG---UGAa--GUAGCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 69325 | 0.67 | 0.982605 |
Target: 5'- uCGCGCUAUGCCAGUuccugcugucGCGCUggggCAU-GGc -3' miRNA: 3'- -GUGUGGUGCGGUCA----------UGUGAa---GUAgCC- -5' |
|||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 76014 | 0.67 | 0.982605 |
Target: 5'- gCGCGCCuGCGgCAGcgGCACcgUCGUgGGg -3' miRNA: 3'- -GUGUGG-UGCgGUCa-UGUGa-AGUAgCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home