miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 67008 0.7 0.922697
Target:  5'- cCGCGCCGCGacCCGGUACGCguggUAggCGGc -3'
miRNA:   3'- -GUGUGGUGC--GGUCAUGUGaa--GUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 15545 0.69 0.933545
Target:  5'- uCAUACUccaGCCGGUACucgUCGUCGGc -3'
miRNA:   3'- -GUGUGGug-CGGUCAUGugaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 42610 0.69 0.943379
Target:  5'- gCGCGCUGCGCCGGcGCGCUgcuagcCGGc -3'
miRNA:   3'- -GUGUGGUGCGGUCaUGUGAagua--GCC- -5'
23705 5' -51.4 NC_005261.1 + 62269 0.69 0.943379
Target:  5'- cCGCGCCGCGCCGGcGCcCgUCGU-GGa -3'
miRNA:   3'- -GUGUGGUGCGGUCaUGuGaAGUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 47166 0.69 0.943379
Target:  5'- cCACGCCAagauCGCCGacccgGCGCUggaCAUCGGc -3'
miRNA:   3'- -GUGUGGU----GCGGUca---UGUGAa--GUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 34927 0.69 0.947031
Target:  5'- cCGCGCCcguCGCCAGggcguccagcugGCGCaagacgUCGUCGGc -3'
miRNA:   3'- -GUGUGGu--GCGGUCa-----------UGUGa-----AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 77276 0.69 0.947919
Target:  5'- gCGCGCUGCGCC-GUGCGCUgcuUCGc -3'
miRNA:   3'- -GUGUGGUGCGGuCAUGUGAaguAGCc -5'
23705 5' -51.4 NC_005261.1 + 8147 0.69 0.947919
Target:  5'- gGCGCCGCGCCAGcgGCucguACUg---CGGg -3'
miRNA:   3'- gUGUGGUGCGGUCa-UG----UGAaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 31414 0.69 0.947919
Target:  5'- gGCGCgCGCGCCGc-GCACcgCGUCGGc -3'
miRNA:   3'- gUGUG-GUGCGGUcaUGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 135003 0.69 0.947919
Target:  5'- cCGCcaGCCGCGCCG--GCACUUCcgccggCGGg -3'
miRNA:   3'- -GUG--UGGUGCGGUcaUGUGAAGua----GCC- -5'
23705 5' -51.4 NC_005261.1 + 125739 0.69 0.952211
Target:  5'- gGgGCCGCGCCGGcGCgACaUCGUCGu -3'
miRNA:   3'- gUgUGGUGCGGUCaUG-UGaAGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 69397 0.68 0.95626
Target:  5'- uCGgGCCGCGCgGGcGCcgcgGCUUCGUUGGc -3'
miRNA:   3'- -GUgUGGUGCGgUCaUG----UGAAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 51652 0.68 0.960068
Target:  5'- -cCGCCGCGCCc-UGCA--UCAUCGGc -3'
miRNA:   3'- guGUGGUGCGGucAUGUgaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 99528 0.68 0.960068
Target:  5'- gCGCACgCugGCCaAGUACAC--CAUCGc -3'
miRNA:   3'- -GUGUG-GugCGG-UCAUGUGaaGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 72375 0.68 0.960068
Target:  5'- gCGCGCCAcCGCCGGcGCGuCguaGUCGGc -3'
miRNA:   3'- -GUGUGGU-GCGGUCaUGU-GaagUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 106927 0.68 0.966006
Target:  5'- aGCGCCGgcggccugaguggcCGCCGGUGCGCgg---CGGg -3'
miRNA:   3'- gUGUGGU--------------GCGGUCAUGUGaaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 137051 0.68 0.966986
Target:  5'- cCGCGCCGCGCC--UGCACcagCGUCu- -3'
miRNA:   3'- -GUGUGGUGCGGucAUGUGaa-GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 117934 0.68 0.966986
Target:  5'- uGC-CCGCGCgGGUgugGCGCUUCcuugCGGa -3'
miRNA:   3'- gUGuGGUGCGgUCA---UGUGAAGua--GCC- -5'
23705 5' -51.4 NC_005261.1 + 134641 0.68 0.966986
Target:  5'- gCGCACCGCGCCGccucuaGCGCcUCG-CGGc -3'
miRNA:   3'- -GUGUGGUGCGGUca----UGUGaAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 76092 0.68 0.966986
Target:  5'- gGCGCCGCGCgGGcGCGCggCGgccccgCGGu -3'
miRNA:   3'- gUGUGGUGCGgUCaUGUGaaGUa-----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.